BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921734

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24520.1 | Symbols: BCP1 | homolog of Brassica campestris po...   604    1e-172


> AT1G24520.1 | Symbols: BCP1 | homolog of Brassica campestris 
pollen protein 1 | chr1:8688629-8689268 FORWARD LENGTH=640
Length=640

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 379/404 (94%), Gaps = 4/404 (1%)
 Strand=Plus/Plus

Query  1    GTAAGAAGGAGAGAGAGAAGAATGGGTCGCCAAAACGTTGTCATCGTGGTTGCCCTCGTC  60
            |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  50   GTAAGAAGGAGAGAGAGAAGAATGGGTCGCCAAAACATTGTCGTCGTGGTTGCCCTCGTC  109

Query  61   TTCATGGCCATCATTGGCCTCGCCGCAGCTGCCTCCTCTCCATCTCCTTCAGCGTCTCCC  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  110  TTCATGGCCATCATTGGCCTTGCCGCAGCTGCCTCCTCTCCATCTCCTTCAGCGTCTCCC  169

Query  121  TCCAAAGCTCCTGCTGCCTCCAAAACCGATCAGGTCGAAGCTCCAGTCACCGATGACCAA  180
            ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  170  TCCAAAGCTCCAGCTGCCTCCAAAACCGATCATGTCGAGGCTCCAGTCACCGATGACCAA  229

Query  181  ATCGGAACCACCGATGACGATGCAGCTCCCACTCCTGGTGATGGTGACGTTGCAGTGGCC  240
            ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct  230  ATCGGAACCACCGATGACGATGCAGCTCCTACTCCTGGTGACGGTGACGTTGCAGTGGCT  289

Query  241  GGTCCTCTAGGAAGTGACTCCTCCTACGCCAATGCACCCT-CAGGCTCTGCCGATTCTGC  299
            ||||||||||||||||||||||| |||| |||||| || | |||||||||| ||||||||
Sbjct  290  GGTCCTCTAGGAAGTGACTCCTCGTACGACAATGCGCC-TACAGGCTCTGCTGATTCTGC  348

Query  300  TGACAGCGGTGCGGCAGCTCTTGGCGTCTCTGCTGTCGTCGTTGGTGTTACATCCATTGC  359
              | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  349  CAAAAGCGGTGCGGCAGCTCTTGGCGTCTCTGCGGTCGTCGTTGGTGTTACATCCATTGC  408

Query  360  CGGTTCTTTCTTGTTATTCTAAGGTGGGTATTGTT--ATGATAA  401
             ||||||||||||||| |||||| |||| ||||||  |||||||
Sbjct  409  TGGTTCTTTCTTGTTACTCTAAGTTGGGCATTGTTTTATGATAA  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5