BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921743
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24440.1 | Symbols: | RING/U-box superfamily protein | chr1... 1282 0.0
AT4G07869.1 | Symbols: | Pseudogene of AT1G24440; protein bind... 366 2e-100
AT4G07841.1 | Symbols: | Pseudogene of AT1G24440; protein bind... 344 7e-94
> AT1G24440.1 | Symbols: | RING/U-box superfamily protein | chr1:8662019-8663964
FORWARD LENGTH=1264
Length=1264
Score = 1282 bits (694), Expect = 0.0
Identities = 764/798 (96%), Gaps = 4/798 (1%)
Strand=Plus/Plus
Query 1 TTAGGGATTT-AGTAAAGGA-GATGTATTATCAGTTGACCAAGTCTTCTTACAGAGACTC 58
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTAGGGATTTAAGTTAAGGAGGATGTATTATCAGTTGACCAAGTCTTCTTACAGAGACTC 359
Query 59 TTTGAAGATTCTGGAGGCTGATATAGAGCACGCCAATGGACTGGCTGCTGAGATTCCAAT 118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TTTGAAGATTCTGGAGGCTGATATTGAGCACGCCAATGGACTGGCTGCTGAGATTCCAAT 419
Query 119 GGGAAAGAGTGGTGTGCGTCTTCAGATGAAATTGGTGTGCAGCAATTTGGCTCCATTCTT 178
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGGAAAGAGCGGTGTGCGACTTCAGATGAAATTGGTGTGCAGCAATTTGGCTCCATTCTT 479
Query 179 TATATTCCT-CTTGCAATGGATGGATTTCTCATGTCTGCTTCCAAGATATTTCGATTTCT 237
|||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 CATATTCCTGC-TACAATGGATGGATTTCTCATGTCTGCTTCCAAGATATTTTGATTTCT 538
Query 238 TCCACATACTCATATACAAGGTACGTGCTGATGGGCGGTGGAATCTATCCAGGTACGGAA 297
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 539 TCCACATACTCATATACAAGGTACGTGCTGATGGGCGGTGGAATCGATCTAGGTACGGAA 598
Query 298 GGAAAGCTACGATTAGGGAGTTTTACGGTGTGATACTACCGTCACTTGAGCGACTTCATA 357
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 599 GGAAAGCTACGATTAGGGAGTTTTACGGTGTTATATTACCATCACTTGAGCGACTTCATA 658
Query 358 TCAACTTTGCTGACTTACCGGACGAAAGCTTGTGGTATCCAAATCCCAAAGCCATCACCA 417
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 659 TCAACTTTGCTGACTTACCGGACGAAAGCTTGTGGTATCCGAATCCAAAAGCCATCACCA 718
Query 418 AGAAGCAGTATGACATTGAAGGTAGCAGATTCATGAATAGCATCGACTTGGAAAGAGAAG 477
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 719 AGAAGCAGTATGACATTGAAGGTAGCAGATACATGAATAGCATTGACTTGGAAAGAGAAG 778
Query 478 ACGAATGCGGGATTTGCTTAGAGCCTTGCACCAAAATGGTGTTGCCAAACTGCTGTCATG 537
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 ACGAATGCGGGATTTGCTTAGAGCCTTGCACCAAAATGGTGTTGCCAAACTGTTGTCATG 838
Query 538 CCATGTGCATCAAATGTTACCGGAACTGGAACACAAAGTCGGAGTCATGCCCCTTTTGTC 597
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 839 CCATGTGCATCAAATGTTACCGTAACTGGAACACAAAGTCGGAGTCATGCCCGTTTTGTC 898
Query 598 GGGGCAGCATCAAGAGAGTGAACTCAGAGGATCTGTGGGTGCTGACATGCGATGAAGATG 657
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 899 GTGGCAGCATCAAGAGAGTGAACTCAGAGGATCTGTGGGTGCTAACTTGCGATGAAGATG 958
Query 658 TGGTGGATCCAGAAACAGTCACCAAAGAGGATCTTCTCCGGTTCTACCTCCACATCAATA 717
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 TGGTGGATCCAGAGACGGTCACCAAAGAGGATCTTCTTCGGTTCTACCTCCACATCAATA 1018
Query 718 GCCTCCCAAAGGATTATCCAGAAGCTGCCTTCTTAGTCTACAACGAGTACTTGATATGAT 777
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 GCCTTCCTAAGGATTATCCAGAAGCGGCCTTCTTAGTCTACAACGAGTACTTGATATGAT 1078
Query 778 TTGATCCCGAAACACAAA 795
|| ||||||||||| |||
Sbjct 1079 TTTATCCCGAAACATAAA 1096
> AT4G07869.1 | Symbols: | Pseudogene of AT1G24440; protein binding
/ zinc ion binding protein | chr4:4693228-4693592 FORWARD
LENGTH=282
Length=282
Score = 366 bits (198), Expect = 2e-100
Identities = 247/271 (91%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 258 GTACGTGCTGATGGGCGGTGGAATCTATCCAGGTACGGAAGGAAAGCTACGATTAGGGAG 317
||||||||||||||||||| ||||||||| || ||||||| ||| |||||||||| ||
Sbjct 13 GTACGTGCTGATGGGCGGTAGAATCTATCTTGGCACGGAAGAAAAAATACGATTAGGAAG 72
Query 318 TTTTACGGTGTGATACTACCGTCACTTGAGCGACTTCATATCAACTTTGCTGACTTACCG 377
||||||||||| ||| |||||| ||||||| |||||||||||||||||| ||||||| |
Sbjct 73 TTTTACGGTGTTATATTACCGTTACTTGAGAGACTTCATATCAACTTTGTTGACTTATTG 132
Query 378 GACGAAAGCTTGTGGTATCCAAATCCCAAAGCCATCACC-AAGAAGCAGTATGACATTGA 436
|| ||||||||||||||||| ||||| |||||||||||| || ||||||| |||||||||
Sbjct 133 GATGAAAGCTTGTGGTATCCGAATCCAAAAGCCATCACCTAA-AAGCAGTGTGACATTGA 191
Query 437 AGGTAGCAGATTCATGAATAGCATCGACTTGGAAAGAGAAGACGAATGCGGGATTTGCTT 496
|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 192 AGGTAGCAGATTTATGAATAGCATTGACTTGGAAAGAGAAGACGAATGCGCGATTTGCTT 251
Query 497 AGAGCCTTGCACCAAAATGGTGTTGCCAAAC 527
|||||||||||||||||||||||||||||||
Sbjct 252 AGAGCCTTGCACCAAAATGGTGTTGCCAAAC 282
> AT4G07841.1 | Symbols: | Pseudogene of AT1G24440; protein binding
/ zinc ion binding protein | chr4:4660966-4661384 FORWARD
LENGTH=336
Length=336
Score = 344 bits (186), Expect = 7e-94
Identities = 243/271 (90%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 258 GTACGTGCTGATGGGCGGTGGAATCTATCCAGGTACGGAAGGAAAGCTACGATTAGGGAG 317
||||||||||||||||||| ||||||||| || || |||| ||| |||||||||| ||
Sbjct 67 GTACGTGCTGATGGGCGGTAGAATCTATCTTGGCACTGAAGAAAAAATACGATTAGGAAG 126
Query 318 TTTTACGGTGTGATACTACCGTCACTTGAGCGACTTCATATCAACTTTGCTGACTTACCG 377
||||||||||| ||| |||||| ||||||| |||||||||||||||||| ||||||| |
Sbjct 127 TTTTACGGTGTTATATTACCGTTACTTGAGAGACTTCATATCAACTTTGTTGACTTATTG 186
Query 378 GACGAAAGCTTGTGGTATCCAAATCCCAAAGCCATCACC-AAGAAGCAGTATGACATTGA 436
|| |||||||||||||||| ||||| |||||||||||| || || |||| |||||||||
Sbjct 187 GATGAAAGCTTGTGGTATCTGAATCCAAAAGCCATCACCTAA-AATCAGTGTGACATTGA 245
Query 437 AGGTAGCAGATTCATGAATAGCATCGACTTGGAAAGAGAAGACGAATGCGGGATTTGCTT 496
|||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct 246 AGGTAGCAGATTTATGAATCGCATTGACTTGGAAAGAGAAGACGAATGCGCGATTTGCTT 305
Query 497 AGAGCCTTGCACCAAAATGGTGTTGCCAAAC 527
|||||||||||||||||||||||||||||||
Sbjct 306 AGAGCCTTGCACCAAAATGGTGTTGCCAAAC 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5