BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921751

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24350.3 | Symbols:  | Acid phosphatase/vanadium-dependent h...   717    0.0  


> AT1G24350.3 | Symbols:  | Acid phosphatase/vanadium-dependent 
haloperoxidase-related protein | chr1:8638982-8640825 REVERSE 
LENGTH=924
Length=924

 Score =  717 bits (388),  Expect = 0.0
 Identities = 435/457 (95%), Gaps = 6/457 (1%)
 Strand=Plus/Plus

Query  3    ACTAGATCCATCATCGGCCATGGAGGAATCTACGGCTACGGCTACGTCTTCGTCTTCGTC  62
            ||||||||||||||||||||||||||| ||||| || |||||||      ||||||||||
Sbjct  229  ACTAGATCCATCATCGGCCATGGAGGATTCTACAGCCACGGCTA------CGTCTTCGTC  282

Query  63   TTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTGATTTCCGCCGTCACCTCTTT  122
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  283  TTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTCATTTCCGCCGTCACCTCTTT  342

Query  123  CACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTATAGGGAACGGAGATGGGATCT  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  343  CACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTATAGGGAACGGAGATGGGATCT  402

Query  183  CAAACAGCTTATTGGGTCCGGAGGAATGCCTTCTTCACATTCAGCTACCGTTACAGCTCT  242
            |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct  403  CAAACAGCTTATTGGGTCTGGAGGAATGCCTTCTTCGCATTCAGCGACCGTTACAGCTCT  462

Query  243  CGCTGTAGCTATTGGTTTGCAAGAGGGTTTTGGTGGATCACATTTTGCCATTGCTTTGGT  302
            |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
Sbjct  463  CGCTGTAGCTATTGGTTTACAAGAAGGCTTTGGTGGATCACATTTTGCCATTGCTTTGAT  522

Query  303  TTTGGCATCTGTTGTGATGTATGATGCTACCGGTGTTAGGTTACATGCCGGTCGTCAAGC  362
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  523  TTTGGCATCTGTTGTGATGTATGATGCTACCGGTGTTAGATTACATGCTGGTCGTCAAGC  582

Query  363  TGAGGTTCTTAATCAGATTGTATACGAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAG  422
            ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  583  TGAGGTTCTCAATCAGATTGTATATGAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAG  642

Query  423  ACCTTTGCGGGAACTTCTCGGTCATACCCCTCCCCAG  459
            |||||||||||||||||| ||||||||||||||||||
Sbjct  643  ACCTTTGCGGGAACTTCTTGGTCATACCCCTCCCCAG  679


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 94/96 (98%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  459  GGTCGTTGCTGGTGGAATGCTTGGAAGTGCCACAGCAGTCACTGGATACTTATTTTTCAG  518
            |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  733  GGTCGTTGCTGGTGGAATGCTTGGAAGTGCTACAGCAGTCACCGGATACTTATTTTTCAG  792

Query  519  GATAGCTACAAGCTAACGTCAAGAACATGCATAGAC  554
            ||||||||||||||||||||||||||||||||||||
Sbjct  793  GATAGCTACAAGCTAACGTCAAGAACATGCATAGAC  828



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26573863763


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5