BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921760
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24267.2 | Symbols: | Protein of unknown function (DUF1664)... 1637 0.0
AT1G24265.3 | Symbols: | Protein of unknown function (DUF1664)... 959 0.0
> AT1G24267.2 | Symbols: | Protein of unknown function (DUF1664)
| chr1:8604069-8607484 REVERSE LENGTH=1660
Length=1660
Score = 1637 bits (886), Expect = 0.0
Identities = 975/1017 (96%), Gaps = 9/1017 (1%)
Strand=Plus/Plus
Query 98 AGGTCTTGTTGGGTCAGTGCTTGCTAAAGAAGGGAGCTTACCAGATGTTTCGAATTTTGT 157
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 285 AGGTCTTGTTGGGTCAGTACTTGCTAAAGAAGGGAGTTTACCAGATGTCTCGAGTTTTGT 344
Query 158 CTCCGGTGCTATTAAGATGGTATTTAGGCAGCTGAAACAAGAAGAACCTACCAAATCAGC 217
|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 345 CTCCGGTGCTCTTAAGATGGTATTTAGGCAGCTGAAGCAAGAAGAACCTGCCAAATCAGC 404
Query 218 CAGCAAGCCCCGCAATGATACACTTATGGCCCAGGTTAACAGTCTTAGGCATGAATTGAG 277
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 405 CAGCAAGCCCCGCAATGATACACTAATGGCCCAGGTTAACAGTCTTAGGCATGAATTGAG 464
Query 278 CTTGCTTTCTTCAAACAGACCTATCACTATTGTAACCACAGCAGGATCAGGTGGTAAAAA 337
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 465 CTTGCTTTCTTCAAACAGACCTATCACTATTGTTACCACAGCAGGATCAGGTGGTAAAAA 524
Query 338 GTATGGTTACATCATTATAATTGGGGTTATAGGCTACGGATATGTATGGTGGAAGGGCTG 397
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 525 GTATGGTTACATCATTATAATTGGGGTGATAGGCTACGGATATGTATGGTGGAAGGGCTG 584
Query 398 GAAACTTCCAGATTTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGT 457
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GAAACTTCCGGATCTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGT 644
Query 458 TGGCAGCCAGATCGATGGTTTTTACACATCACTCTCGGGTA-CAAAACAAGAGTTAAGTT 516
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 645 TGGCAGCCAGATCGATGGTTTTTACACATCACTCTCGGGTACCAAAA-AAGAGTTAAGTT 703
Query 517 CAAAAATTGACGGGATGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGAAACAG 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 704 CAAAAATTGACGGGATGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGATACAG 763
Query 577 GACGAGAGGTGATGGAACTACAAAGAGGTACAGAAAATATTAAGGATGACGTTAAGTTTG 636
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 764 GACGAGAGGTGATGGAACTACAAAGAGGTACGGAAAATATTAAGGATGACGTTAAGTTTG 823
Query 637 TTTTCGATGCTGTTGAAACTCTGGCAAGCAAA--G-TCTATCGTATTGAGGGAAATCAGG 693
|||||||||||||||||| ||||| ||| ||| | ||||||||||||||||||||||||
Sbjct 824 TTTTCGATGCTGTTGAAAATCTGGTAAGAAAATTGATCTATCGTATTGAGGGAAATCAGG 883
Query 694 ATATCACGCTTAAAGGAGTCGGGGCTCTGCATGCTCA-GTGTCGGGAGAACAAAAGAATT 752
|||| || ||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 884 ATATTACACTTAAAGGAGTCGGGGCGCTGCATGCTCAGGT-TCGGGAGAACAAAAGAATT 942
Query 753 CAAGAGTCCAATCAGGCTTTGCCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCT 812
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 943 CAAGAGTCCAATAAGGCTTTACCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCT 1002
Query 813 ATGACACCATCGTCAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCGTGAATCCCAGTCA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1003 ATGACACCATCGTCAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCGTGAATCTCAGTCG 1062
Query 873 CCTTCAACTTCTAATGGAGCTCAACAGTCACGTGGTCCACTTCAGCACACTCAATCTATG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CCTTCAACTTCTAATGGAGCTCAACAGTCACGTGGTCCACTTCAGCACACTCAATCTATG 1122
Query 933 TCTGGTTTGAAGGAGATAAGCGAAAATGGAACACATTCTGGAGAAACTACGGGGAACACA 992
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1123 TCTGGTTTGAAGGAGATAAGCGAAAATGGAACACATTCTGGAGAAACTACGGGAAACACG 1182
Query 993 AGTTCAGGCCTGTTTAGTATGTTCTCAATGCCAAGAATAGGGAGGACTCGTAGTGTGGTC 1052
||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1183 AGTTCTGGCCTGTTTAGTATTTTCTCAATACCAAGAATAGGGAGGACTCGAAGTGTGGTC 1242
Query 1053 AACACAGTGCCTACTAACTCCGTTGGACCCCAATAGGGG-CTTGTCAATACTGAAGA 1108
||||||||||||||||||||| |||||||||||||| | || ||||||||||||||
Sbjct 1243 AACACAGTGCCTACTAACTCCATTGGACCCCAATAGTCGTCT-GTCAATACTGAAGA 1298
> AT1G24265.3 | Symbols: | Protein of unknown function (DUF1664)
| chr1:8600477-8603801 FORWARD LENGTH=1388
Length=1388
Score = 959 bits (519), Expect = 0.0
Identities = 748/859 (87%), Gaps = 14/859 (2%)
Strand=Plus/Plus
Query 100 GTCTTGTTGGGTCAGTGCTTGCTAAAGAAGGGAGCTTACCAGATGTTTCGAATTTTGTCT 159
||||| |||| |||| || ||||||||||| ||||||||||||| || ||||| || |
Sbjct 214 GTCTTATTGGATCAGCATTTTCTAAAGAAGGGGGCTTACCAGATGTCTCCAATTTGGTTT 273
Query 160 CCGGTGCTATTAAGATGGTATTTAGGCAGCTGAAACAAGAAGAACCTACCAAATCAGCCA 219
| |||||| ||||||||||||| ||||| ||||||||||| ||||||| ||||||||| |
Sbjct 274 CTGGTGCTTTTAAGATGGTATTCAGGCAACTGAAACAAGACGAACCTAGCAAATCAGCTA 333
Query 220 GCAAGCCCCGCAATGATACACTTATGGCCCAGGTTAACAGTCTTAGGCATGA-ATTGAGC 278
|||| |||| | ||||| |||| |||||||||||||||||||||||||||| || ||
Sbjct 334 GCAAACCCCACGATGATGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAG- 392
Query 279 TTGCTTTCTTCAAACAGACCTATCACTATTGTAACCA-CAGCAGGATCAGGTGGTAAAAA 337
||||| ||||||||||||||||| ||||| || | ||||||||||||||| |||
Sbjct 393 TTGCTGGGGTCAAACAGACCTATCACCATTGT-TTCACCTTCAGGATCAGGTGGTAGAAA 451
Query 338 GTATGGTTACATCATTATAATTGGGGTTATAGGCTACGGATATGTATGGTGGAAGGGCTG 397
||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 452 CTATGGTTTGATCATTATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTG 511
Query 398 GAAACTTCCAGATTTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGT 457
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 512 GAAACTTCCAGATTTTATGTTTGCAACAAGGCGTAGCTTATCAGATGCATGTAATAATGT 571
Query 458 TGGCAGCCAGATCGATGGTTTTTACACATCACTCTCGGGTACAAAACAAGAGTTAAGTTC 517
||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 572 TGGCAACCAGATCGATGGTTTTTACTCATCACTCAAGGGTACAAAACGAGAGTTAAGTTC 631
Query 518 AAAAATTGACGGGATGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGAAACAGG 577
| ||||||| |||||||||| |||||||||| ||||||||| | ||||||||||||
Sbjct 632 AGAAATTGATATGATGGGTCGTCGTTTGGATGCAAATACAGAAGTAATTCAAGAAACAAT 691
Query 578 ACGAGAGGTGA-TGGAA-CTACAAAGA-GGTACAGAAAATATTAAGGATGACGTTAAGTT 634
|| ||||||| | || ||||| || |||||| | ||| |||||||||||||||
Sbjct 692 ACAAGAGGTGGCT--AAGCTACAG-GATGGTACATCATTTATAAAGGATGACGTTAAGGC 748
Query 635 TGTTTTCGATGCTGTTGAAACTCTGGCAAGCAAAGTCTATCGTATTGAGGGAAATCAGGA 694
||||||||||||| |||||| ||||||||||||||| | |||||| ||||||||||||||
Sbjct 749 TGTTTTCGATGCTTTTGAAAATCTGGCAAGCAAAGTGTGTCGTATAGAGGGAAATCAGGA 808
Query 695 TATCACGCTTAAAGGAGTCGGGGCTCTGCATGCTCAGTGTCGGGAGAACAAAAGAATTCA 754
|||||| |||| |||||| |||||||||||||||||||||| ||||||| ||||||||||
Sbjct 809 TATCACACTTAGAGGAGTTGGGGCTCTGCATGCTCAGTGTCAGGAGAACCAAAGAATTCA 868
Query 755 AGAGTCCAATCAGGCTTTGCCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCTAT 814
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 869 AGAGTCCAATAAGGCTTTGCCATCAACTTCATCACTGCCAGCCCTTGAGGCAGCTCCTAT 928
Query 815 GACACCATCGTCAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCG-TGAATCCCAGTCAC 873
| |||| || |||| |||| ||||||| ||||||||||||||| | |||||||||||| |
Sbjct 929 GGCACCCTCTTCAAAGACTCTGTCTTTACCTCCTGCTTCTCCC-GATGAATCCCAGTCCC 987
Query 874 CTTCAACTTCTAATGGAGCTCAACAGTCACGTGGTCC-ACTTCAGCACACTCAATCTATG 932
| ||||| |||||| ||||||| ||||||| || || ||||||||||||||||||||||
Sbjct 988 CGTCAACCCCTAATGTAGCTCAAAAGTCACGGGG-CCTACTTCAGCACACTCAATCTATG 1046
Query 933 TCTGGTTTGAAGGAGATAA 951
|||||||||||||| ||||
Sbjct 1047 TCTGGTTTGAAGGACATAA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5