BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921765
Length=412
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A | ch... 669 0.0
AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B | ch... 272 2e-72
> AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A |
chr1:9484316-9485896 REVERSE LENGTH=774
Length=774
Score = 669 bits (362), Expect = 0.0
Identities = 379/387 (98%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 11 ACGAAAG-AAGAGATGGATCCAGACGCAGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 69
||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 95 ACG-AAGAAAGAGATGGATCCAGACGCTGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 153
Query 70 CACCTTCGATGCAAATCGTCCAGGTTTGGTTTCTCTGTACCAAGAAGGATCCATGTTGAC 129
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 154 CACCTTCGATGCAAATCGTCCAGGGTTGGTTTCTCTATACCAAGAAGGATCCATGTTGAC 213
Query 130 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCAGCCTCCC 189
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 214 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCGGCCTCCC 273
Query 190 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 333
Query 250 CGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 393
Query 310 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGATAT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 394 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGACAT 453
Query 370 ATTCAGGTTGAACTATGCCTGAGGAAT 396
|||||||||||||||||||||||||||
Sbjct 454 ATTCAGGTTGAACTATGCCTGAGGAAT 480
> AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B |
chr1:9746811-9748467 FORWARD LENGTH=676
Length=676
Score = 272 bits (147), Expect = 2e-72
Identities = 298/369 (81%), Gaps = 18/369 (5%)
Strand=Plus/Plus
Query 21 AGATGGATCCAGACGCAGT-TGCAAAGGCTTTCGTTGAGCACTACTACTCCACCTTCGAT 79
|||||||||| ||||| || | | ||||| ||||| || || ||||| |||||||||||
Sbjct 118 AGATGGATCCCGACGCTGTAT-CTAAGGCCTTCGTCGAACATTACTATTCCACCTTCGAC 176
Query 80 GCAAATCGT-CCAGGTTTGGTTTCTCTGTACCAAGAAGGATCCATGTTGACCTTCGAAGG 138
| || ||| | ||| | | | ||| || || |||| || ||| | |||||||||||
Sbjct 177 ACCAACCGTGTC-GGTCTCGCTGGTCTCTATCAGGAAGCTTCTATGCTCACCTTCGAAGG 235
Query 139 CCAGAAGATCC-AGG-GCTCTCAGAACATCGTCGCTAAGCTCACCAGC-CTCCCTTTCCA 195
|| ||||||| ||| | || |||| ||||||||||||||||||| | || ||||||||
Sbjct 236 TCAAAAGATCCAAGGAG-TC-CAGAGCATCGTCGCTAAGCTCACC-TCTCTTCCTTTCCA 292
Query 196 GCAGTGTAAGCA-CAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGGCGGTA 254
|||||| ||||| | ||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 293 GCAGTGCAAGCATC-ACATCTCCACCGTTGATTGTCAGCCTTCTGGTCCTGCTTCCGGTA 351
Query 255 TGCTCGTCTTT-GTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAAGTTC 313
||||||| ||| |||||||| ||||| |||||||| || ||| |||||||||||||||||
Sbjct 352 TGCTCGT-TTTCGTCTCCGGTAATCTCCAGCTCGCCGGAGAAGAACACGCTCTCAAGTTC 410
Query 314 AGCCAGATGTTCCATTTGATATCGAATC-AG--GGAAACTACTACGTGTTCAATGATATA 370
||||||||||| |||||||| ||| | | |||| || ||||||||||| ||||||
Sbjct 411 AGCCAGATGTTTCATTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATATA 470
Query 371 TTCAGGTTG 379
||||| |||
Sbjct 471 TTCAG-TTG 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19503886612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5