BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921770
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27360.1 | Symbols: SPL11 | squamosa promoter-like 11 | chr1... 1792 0.0
AT1G27370.1 | Symbols: SPL10 | squamosa promoter binding protei... 1351 0.0
> AT1G27360.1 | Symbols: SPL11 | squamosa promoter-like 11 | chr1:9501971-9503869
FORWARD LENGTH=1504
Length=1504
Score = 1792 bits (970), Expect = 0.0
Identities = 1150/1234 (93%), Gaps = 23/1234 (2%)
Strand=Plus/Plus
Query 3 AAATCAACCCATATCTTGAATGGACTGCAGCATGGTATCTTCGTTCCAGTGGGACTGGGA 62
||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 150 AAATCAACCCATATCGTGAATGGACTGCAACATGGTATCTTCGTCCCAGTGGGATTGGGA 209
Query 63 G-AGTTTGATCATGTCCAATCCGTCAAGGGCTGTAA-ATGACAGCAAGCAGCAATCTACT 120
| | ||||||||||||||||||||||||| ||| || |||||||||| |||| | |||||
Sbjct 210 GCA-TTTGATCATGTCCAATCCGTCAAGGACTG-AAGATGACAGCAAACAGCTACCTACT 267
Query 121 GAGTGGGAAATTGAAAAAGGTGACGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 268 GAGTGGGAAATTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTT 327
Query 181 GAGAGAGTCAGTAGTGGCTCTGCCACCAGTTTCTGGCGCACTGCTGTATCAAAAAGCTCA 240
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 328 GAGAGAGTCAGTAGTGGCTCTGCCACCAGCTTCTGGCACACTGCTGTATCGAAAAGCTCA 387
Query 241 CAGTCGACCTCTATCCATTCATCATCTCCCGAAGTCAAACGATGCAAGCTTGCATCAGAA 300
||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 388 CAGTCGACCTCTATCAACTCATCATCTCCCGAAGCCAAACGATGCAAGCTTGCATCAGAA 447
Query 301 AGTTCTCCTGGAGATTCTTGCAGCAACGTAGATTTTGTCCAGTTTAAGGCAT-CCACAGC 359
||||| ||||||||||||||||||||| |||| ||||||||| | ||||| | |||||||
Sbjct 448 AGTTCCCCTGGAGATTCTTGCAGCAACATAGACTTTGTCCAGGTGAAGGC-TCCCACAGC 506
Query 360 TCCCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGAC 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 TCTCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGAC 566
Query 420 ATACTCTGAAGAATATTGGGGTAGAAACAATAATGAAATTTCAGCAGTTTCTATGAAGTT 479
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 567 ATACTCTGAAGAATACTGGGGTAGAAACAATAATGAAATTTCAGCGGTTTCTATGAAGTT 626
Query 480 GTTGACTCCATCTGTTGTCACTCGGAAAAATTCCAAAT-GTG-G-TCAGAGCATGCTAGT 536
||| ||||||||||||||| || ||||| | |||||| ||| | ||||||||||| |||
Sbjct 627 GTTAACTCCATCTGTTGTCGCTGGGAAA--T-CCAAATTGTGTGGTCAGAGCATGCCAGT 683
Query 537 CCCGCGTTGCCAAATTGATGGTTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCG 596
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 684 CCCGCGTTGCCAAATTGATGGCTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCG 743
Query 597 TAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAGCGTGAGTGGCCTGGT 656
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TAAGCACAAAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAGCGTGAGTGGCCTGGA 803
Query 657 ACGTCGATTCTGCCAACAGTGTAGCAGGTTCCATGAC-GTCTCTGAATTTGATGATAAGA 715
|||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 804 ACGTCGGTTCTGCCAACAGTGTAGCAGGTTCCATG-CTGTCTCTGAATTTGATGAGAAGA 862
Query 716 AACGGAGCTGTCGAAAACGTCTTTCTCATCATAATGCCAGGCGTCGTAAGCCACAAGGAG 775
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 863 AACGAAGCTGCCGAAAACGTCTTTCTCATCATAATGCGAGGCGTCGTAAGCCACAAGGAG 922
Query 776 TATTTTCAGTGAATCCAGAGAGGCTGTATGATCGAAGACAGCATACAAATATGTTGTGGA 835
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 923 TATTTTCAATGAATCCCGAGAGGGTGTATGATCGAAGACAGCATACAAATATGTTGTGGA 982
Query 836 ATGAGTTGTCACTTAACACGAGATCAGAAGAATTGTGTGAATGGGGTAC---CACTTATG 892
||| | |||| |||||| ||||||| |||||| ||| ||||||||||| ||||||||
Sbjct 983 ATGGGGTGTCCCTTAACGCGAGATCTGAAGAAATGTATGAATGGGGTAATAACACTTATG 1042
Query 893 ATACAAAGCCTACACAGACAGAAAAAGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 952
|||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 1043 ATACAAAGCCTAGACAAACGGAAAAAAGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 1102
Query 953 CTGAGGACCAGTTGGTTGCTAGTAACAGCCGTATGTTCTCGACAGT-TCAAACCTCAGGC 1011
||||||||||| |||||||||||| ||||||||||||||| ||| | ||||||||||||
Sbjct 1103 CTGAGGACCAGCTGGTTGCTAGTAGCAGCCGTATGTTCTCTACA-TCTCAAACCTCAGGT 1161
Query 1012 GGGTTCCCAGCAGGAAAGTCCAAGTTTCAACTTCATGGCGAAGCTGTGGGAGAATACTCA 1071
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1162 GGGTTCCCAGCAGGAAAGTCCAAGTTTCAACTTCATGGCGAAGATGTGGGAGAATACTCA 1221
Query 1072 GGAGTCCTCCATGAATCTCAAGATTTCCACCGTGCTCTCTCTCTTCTGTCAACCTCTTCG 1131
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1222 GGAGTCCTCCATGAATCTCAAGATATCCACCGTGCTCTCTCTCTTCTGTCAACCTCTTCG 1281
Query 1132 GATCCCCTGACCCAACCACATGCGCAGCCATTCTCTCCACTCTGTTCATATGATGTTGTA 1191
||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 1282 GATCCCCTGGCCCAACCACATGTGCAGCCATTTTCTCTACTCTGTTCATATGATGTTGTA 1341
Query 1192 CCAAAATAGAT-A--A-GTAATGTGTAATTTGTA 1221
||||||||||| | | |||||||||||||||||
Sbjct 1342 CCAAAATAGATGAGTAAGTAATGTGTAATTTGTA 1375
> AT1G27370.1 | Symbols: SPL10 | squamosa promoter binding protein-like
10 | chr1:9505201-9508280 REVERSE LENGTH=2727
Length=2727
Score = 1351 bits (731), Expect = 0.0
Identities = 1014/1148 (88%), Gaps = 29/1148 (3%)
Strand=Plus/Plus
Query 3 AAATCAACCCATATCTTGAATGGACTGCAGCATGGTATCTTCGTTCCAGTGGGACTGGGA 62
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1265 AAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTTCGTTCCCGTGGGACTGGGA 1324
Query 63 GAGTTTGATCATGTCCAATCCGTC-AAGGGCTGTAAATGACAGCAAGCAGCAATCTACTG 121
|| ||||||||||||||||| ||| || | ||| |||||| | || |||||||||||||
Sbjct 1325 GAATTTGATCATGTCCAATCAGTCGAA-GACTGAAAATGAAAAAAAACAGCAATCTACTG 1383
Query 122 AGTGGGAAATTGAAAAAGGTGACGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTTG 181
|||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||| |||
Sbjct 1384 AGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTCTTAGGCTTTG 1443
Query 182 AGAGAGTCAGTAGTGGCTCTGCCACCAGTTTCTGGCGCACTGCTGTATCAAAAAGCTCAC 241
||| |||||||||||||||||| || |||||||||| |||||| |||||||||||||| |
Sbjct 1444 AGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACACTGCCGTATCAAAAAGCTCGC 1503
Query 242 AGTCGACCTCTATCCATTCATCATCTCCCGAAGTCAAACGATGCAAGCTTGCATCAGAAA 301
|||||||||||||| | |||||||||||||| | |||||||||||| ||||||||| |||
Sbjct 1504 AGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTTGCATCACAAA 1563
Query 302 GTTCTCCTGGAGATTCTTGCAGCAACGTAGATTTTGTCCAGTTTAAGGCATCCACAGCTC 361
|||| ||||||||||||| ||||||| |||||||| ||||| | || ||||||||||||
Sbjct 1564 GTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTCTCCAGGTGAAACCATCCACAGCTC 1623
Query 362 CCGAGGTATCC-GTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGACA 420
||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1624 TCGAGGTA-CCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGAAAGCGGACA 1682
Query 421 TACTCTGAAGAATATTGGGGTAGAAACAATAATGAAATTTCAGCAGTTTCTATGAAGTTG 480
||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||| |||
Sbjct 1683 TACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCTATGAATTTG 1742
Query 481 TTGACTCCATCTGTTGTCACTCGGAA-AAATTCCAAA---TGTGGTCAGAGCATGCTAGT 536
||||||||||||||||| ||||||| ||| ||||| |||||||||||||||| |||
Sbjct 1743 TTGACTCCATCTGTTGTTGCTCGGAAGAAA-ACCAAATCGTGTGGTCAGAGCATGCAAGT 1801
Query 537 CCCGCGTTGCCAAATTGATGGTTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCG 596
|||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||
Sbjct 1802 TCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGATTATCATCG 1861
Query 597 TAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAG-CGTGAGTGGCCTGG 655
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 1862 CAAGCATAGAGTCTGCGAAACGCATTCAAAGTGCCCAAAAGTT-GTTGTGAGTGGCCTGG 1920
Query 656 TACGTCGATTCTGCCAACAGTGTAGCAGGTTCCATGAC-GTCTCTGAATTTGATGATAAG 714
|||||| |||||||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 1921 AACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATG-CTGTCTCAGAATTTGATGAAAAG 1979
Query 715 AAACGGAGCTGTCGAAAACGTCTTTCTCATCATAATGCCAGGCGTCGTAAGCCACAAGGA 774
||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1980 AAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCACAAGGA 2039
Query 775 GTATTTTCAGTGAATCCAGAGAGGCTGTAT-GATCGAAGACAGCATACAAATATGTTGTG 833
|||||| || ||||| |||||||| ||| | ||||||||||||||||||| |||||||||
Sbjct 2040 GTATTTCCACTGAATTCAGAGAGGGTGT-TCGATCGAAGACAGCATACAAGTATGTTGTG 2098
Query 834 GAATGAGTTGTCACTTAACACGAGATCAGAAGAATTGTGTGA-ATGGGGTACCACTTATG 892
||||| |||||| |||||||||||||| |||||| || | | |||||||||||||||||
Sbjct 2099 GAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTAT-ACATGGGGTACCACTTATG 2157
Query 893 ATACAAAGCCTACACAGACAGAAAAAGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 952
| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2158 AGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 2217
Query 953 CTGAGGACCAGTTGGTTGCTAGTAACAGCCGTATGTT-CTC-GACAGTT-CAAACCTCAG 1009
|||||||||| || || || ||| || || | | || ||| | | ||| ||||| || |
Sbjct 2218 CTGAGGACCAACTGTTTACTGGTAGCACCC-TCTCTTTCTCTG-C-GTTTCAAACATCTG 2274
Query 1010 GCGGGTTCCCAGCAGG-AAAGTCCAAGTTTCAACTTC-ATGGCGAAGCTGTGGGAGAATA 1067
| |||||| ||||||| ||| ||||| ||||||||| | | | ||| |||||||||||
Sbjct 2275 GTGGGTTCTCAGCAGGGAAA-TCCAACATTCAACTTCCA-GACAAAGGTGTGGGAGAATG 2332
Query 1068 CTCAGGAGTCCTCCATGAATCTCAAGATTTCCACCGTGCTCTCTCTCTTCTGTCAACCT- 1126
|||||||| ||||||||||||||| |||||| || |||||||||||||||||||||| |
Sbjct 2333 CTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAAC-TA 2391
Query 1127 CTTCGGAT 1134
||||||||
Sbjct 2392 CTTCGGAT 2399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5