BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921775
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27390.1 | Symbols: TOM20-2 | translocase outer membrane 20-... 680 0.0
> AT1G27390.1 | Symbols: TOM20-2 | translocase outer membrane 20-2
| chr1:9513089-9515001 REVERSE LENGTH=1102
Length=1102
Score = 680 bits (368), Expect = 0.0
Identities = 580/679 (85%), Gaps = 27/679 (4%)
Strand=Plus/Plus
Query 1 TCTTTCACCTGAATCTGAAGATGGAGTTCTCTACCGCCGACTTTGAAAGGCTTCTCATGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 70 TCTTTCACCTGAATCTGAAGATGGAGTTCTCTACCGCCGACTTTGAAAGGCTTATCATGT 129
Query 61 TTGACCATGCTCGCAAAGCTTCTGAGGCTCAGTACCTTAACGATCCTCTTGATTCCGAGA 120
| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 130 TCGAACATGCTCGCAAAAATTCTGAGGCTCAGTACAAGAACGATCCTCTTGATTCCGAGA 189
Query 121 ATCTGGTTAAATGGGGCGGAGCATTGCTTGAACTTTCTCAATTCCAGAAC-ATTCCTGAT 179
||||| | |||||||| ||||| || ||||||||||| || |||||| | ||||||||
Sbjct 190 ATCTGCTGAAATGGGGTGGAGCTTTACTTGAACTTTCACAGTTCCAGC-CTATTCCTGAA 248
Query 180 GCAAAGGTGATGTTAAATGATGCTATTTCCAAGTTGGAAGAGGCGTTGACATTAAATCCA 239
|| ||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 249 GCTAAGCTCATGTTAAATGATGCTATTTCCAAGTTGGAAGAGGCCTTGACAATAAATCCA 308
Query 240 GGGAAGCATCAGGCTCTTTGGTGTCTTGGGAACGCCTACACTTCCCATGCATTTCT-TGT 298
|||||||||||||||||||||||| ||| ||||| ||||| |||| || ||| | |||
Sbjct 309 GGGAAGCATCAGGCTCTTTGGTGTATTGCCAACGCGTACACCGCCCACGCGTTT-TATGT 367
Query 299 TC-CAGATGTTGATGAAGCAAGAGGGCACTTTGATAAAGCCGCTGAATATTTCCAAAGAG 357
|| | ||| ||| ||||||| || |||||||||||||||| ||||||||||||| ||||
Sbjct 368 TCAC-GATCCTGAAGAAGCAAAAGAGCACTTTGATAAAGCCACTGAATATTTCCAGAGAG 426
Query 358 CTGAAAATGAGGATCCAGGCAATGAGGTATATCTCAAGTCCTTGGAGGTCA-CAAC-AAA 415
| ||||||||||||||||| ||||| ||||| |||||||||||| || || | |||
Sbjct 427 CAGAAAATGAGGATCCAGGTAATGACACATATCGCAAGTCCTTGGAT-TCCTCA-CTAAA 484
Query 416 GGCCCCAGAACTGCATATGGAGATACAT-AAGCATGGAATGGGACAGCAAATACTAGGTG 474
|||||| |||||||||||| || | || || || |||||||||||||||||||||||||
Sbjct 485 GGCCCCGGAACTGCATATGCAGTTT-ATGAATCAAGGAATGGGACAGCAAATACTAGGTG 543
Query 475 TAGGAGGAGGTCCT--TCC-G---------CTTCAGCGAATGTTAGC-AGTG--GTAAGA 519
||||||||| | | ||||| | ||||||||| || | ||||||
Sbjct 544 GAGGAGGAGGAGGAGGTGGAGGAGGAATGGCTTCATCTAATGTTAGCCAGAGTAGTAAGA 603
Query 520 AGAAGAGGAAGAACAATGACTTCACTTATGATGTATGTGGTTGGATAATTCTTGCGTGTG 579
|||||| || ||||| ||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 604 AGAAGAAGAGGAACACTGAATTCACTTATGATGTATGCGGTTGGATAATTCTCGCTTGTG 663
Query 580 GTATTGTTGCTTGGATTGGCATGGCAAAATCCCTTGGCCCTCCACCTCCTGCTAGATGAA 639
| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 664 GGATTGTTGCTTGGGTTGGCATGGCAAAATCCCTTGGCCCTCCACCTCCTGCCAGATAAA 723
Query 640 GCCTAAAGCCATAGTAGTG 658
|||||||||||||||||||
Sbjct 724 GCCTAAAGCCATAGTAGTG 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5