BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921778
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27420.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1670 0.0
> AT1G27420.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:9519108-9520520 FORWARD LENGTH=1041
Length=1041
Score = 1670 bits (904), Expect = 0.0
Identities = 996/1041 (96%), Gaps = 4/1041 (0%)
Strand=Plus/Plus
Query 22 ATGGTGGTCGAGGAGTCGTTGTATCCGATCATACCTGGCTTGACGGATGACGTGGCGGAG 81
|||||||| ||| ||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGTGGTGGAGTCGTCGTCGTCTCCGATCATACCTGGCTTGACGGATGACGTGGCAGAG 60
Query 82 CTCTGTGTCTCGAAAATCCCGCGGTCTAGCTTTCAGATCACTTCTCAGGTGTGCCGTCGA 141
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTCTGTGTCTCGAAAATCCCGAGGTCTAGCTTTCAGATCACTTCTCAGGTGTGCCGGCGA 120
Query 142 TGGAGGTCATTCCTCAGGAGCCAGCATTTTGCAGCCGTTCGAAAGTTGACCGGAACGGTG 201
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGGAGGTCATTCCTCAGGAGCCAGCATTTTGCAGCTGTTCGAAAGTTGACCGGAACGGTG 180
Query 202 GAGGAGTTCCTGTGTGTTCTGATGGAAAGCGAGTGTGGAAGAGACGTGTACTGGGAAGTT 261
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAGTTCCTGTGTGTTCTAATGGAAAGCGAGTGTGGAAGAGACGTGTACTGGGAAGTT 240
Query 262 TTCGACGCCTCCGGGAACAAGTTAGGCCAGATCCCTCCTGTCCCTGGGCCCTTGAAGCGC 321
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGACGCCTCCGGGAACAAGTTAGGCCAGATCCCTCCTGTCCCTGGGCCCTTGAAGCGC 300
Query 322 GGTTTCGGCGTTGCAGTGCTTGATGGCGGGAAGATTGTGTTCTTTGGAGGATATACGGAG 381
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGTTTCGGCGTTGCAGTGCTTGATGGCGGGAAGATTGTGTTCTTCGGAGGATATACGGAG 360
Query 382 GTTGAAGGCTCTGGGATCAATAGCACCACTGTCTCTGCCTCTGCTGATGTTTACGAGTTT 441
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGAAGGCTCTGGCATCAATAGCACCACTGTCTCTGCCTCTGCTGATGTTTACGAGTTT 420
Query 442 GATCCTGCTTCTAACAGCTGGAGAAAACTAGCGGCCATGAACATACCACGTTACAACTTT 501
||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 421 GATCCTGCTAATAACAGCTGGAGAAAACTTGCGGGAATGAACATACCACGTTACAACTTT 480
Query 502 GCATTTACTGAAGTGAACGGTCTTTTGTATGTGATTCGAGGCTATTCCACAGATACTTAT 561
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 GCATTTGCTGAAGTGAACGGTCTTTTGTATGTGATTAGAGGCTATTCCACAGATACTTAT 540
Query 562 AGCCTTTCCAACGCGGAAGTGTACAACCCGCATACTAA-CAGATGGAGTCTTATGGATTG 620
|||||||||||||||||||| ||||||||| | ||||| || ||||||||||||| ||||
Sbjct 541 AGCCTTTCCAACGCGGAAGTATACAACCCGAAAACTAACCA-ATGGAGTCTTATGCATTG 599
Query 621 TCCAAACCGCCCTGTTTGGCGCGGCTTTGCATTCGCCTTCAATTACAAACTCTACGCTGT 680
|||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 600 TCCAAATCGCCCTGTTTGGCGCGGCTTTGCATTCGCATTCAGTTCCAAACTCTACGCTGT 659
Query 681 AGGCAATGGATCGAGGTTCATCGATATATATGACCCGAAAACGCAGACATGGGAAGCGTT 740
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 660 AGGCAATGGTTCGAGGTTCATCGACATATATGACCCGAAAACGCAGACATGGGAAGAGTT 719
Query 741 AAACTCGGAGCAATCAGTGTCGGTGTATTCCTACACGGTTGTGAGGAATAAAGTGTTTTT 800
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 720 AAACTCGGAGCAATCAGTGTCGGTGTATTCCTACACAGTTGTGAGGAACAAAGTGTATTT 779
Query 801 TATGGACAGGAACATGCCGGGACGTCTGGGAGTGTTTGATCCAGAGGAGAATTCGTGGAG 860
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 CATGGACAGGAACATGCCGGGACGTCTGGGAGTATTTGATCCAGAGGAGAATTCGTGGAG 839
Query 861 TTCGGTGTTTGTGCCTCCGAG-GGAGGGAGGTTTCTGGGTGAGACTAGGAGTATGGAACA 919
||| ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 840 TTCAGTGTTTGTGCCTCCGAGAGAAGGG-GGTTTCTGGGTGAGACTAGGAGTATGGAACA 898
Query 920 ATAAGGTTCTACTGTTTTCACGTGTTTGTGGACATGAGACCTTAATGTACGACCTTGATA 979
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 ATAAGGTTCTACTGTTTTCACGGGTTTGTGGACATGAGACCTTAATGTACGACCTTGATA 958
Query 980 AAGAGAAAGGTTCCAAATGGAGAGTGTGTGATCAGATTAAACCATCTGCTTCTCAATTGG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGAGAAAGGTTCCAAATGGAGAGTGTGTGATCAGATTAAACCATCTGCTTCTCAATTGG 1018
Query 1040 CCAGCGTTCTTATCAACTTCT 1060
|||||||||| ||||||||||
Sbjct 1019 CCAGCGTTCTCATCAACTTCT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5