BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921780

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27435.1 | Symbols:  | unknown protein; Has 16 Blast hits to...   449    5e-126


> AT1G27435.1 | Symbols:  | unknown protein; Has 16 Blast hits 
to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:9527574-9528878 REVERSE LENGTH=692
Length=692

 Score =  449 bits (243),  Expect = 5e-126
 Identities = 273/288 (95%), Gaps = 0/288 (0%)
 Strand=Plus/Plus

Query  3    GAGAAAGAAAGAGAGAGGCGGCCATGGGAGGAGGAATGGGTGCGTTTTGGGGAACTCGAG  62
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  42   GAGAGAGAACGAGAGAGGCGGCCATGGGAGGAGGAATGGGTGCGTTTTGGGGAACTCGAG  101

Query  63   TGATGGAATTGGTGAAGAAGCACGATTCCGGTGGTCTTCTTTGGAAGCGGATCAAGCTTA  122
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  102  TGATGGAATTAGTGAAGAAGCACGATTCCGGTGGTCTTCTTTGGAAGCGGATCAAGCTAA  161

Query  123  CACCTACTCGTAAAGCCAATGCCAAAACCCGCCTCCGTCGCGTTTGGCAGAATGAGGCTG  182
            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  162  CCCCTACTCGTAAAGCCAATGCCAAAACCCGCCTCCGTCGTGTTTGGCAGAATGAGGCTG  221

Query  183  TTCTAAGGGCGTGTGGTGAATCAGATGCACCAAATTCTCCGGGAGCTAGCAACACAAAAA  242
            ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  222  TTCTAAGGGCGTGTGGTGAATCAGATGCACCAAATCCGCCGGGAGCTAGCAACACAAAAA  281

Query  243  TCTGTAGCAGTGCGGTGAAAAATGAGTAAGACGGAAGAGGAGCTAGTC  290
             || ||||| |||||||||||||| ||||| | |||||| ||||||||
Sbjct  282  GCTCTAGCAATGCGGTGAAAAATGCGTAAGGCCGAAGAGAAGCTAGTC  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5