BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921783
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27460.1 | Symbols: NPGR1 | no pollen germination related 1 ... 3424 0.0
> AT1G27460.1 | Symbols: NPGR1 | no pollen germination related
1 | chr1:9534532-9537561 FORWARD LENGTH=2519
Length=2519
Score = 3424 bits (1854), Expect = 0.0
Identities = 2026/2110 (96%), Gaps = 8/2110 (0%)
Strand=Plus/Plus
Query 1 GTGAGGAGAAGGAGGAGAAGATGTTGTGTGCTTGTTCAGGCGAACAATTCCGGTTCGAGG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GTGAGGAGAAAGAGGAGAAGATGTTGTGTGCTTGTTCAGGCGAACAATTCCGGTTCGAGG 337
Query 61 ATCAGCCCGGTTCGCCGGAATCCCTAGCTACTAGAGATTTCTCAGCTAGTGGACTTTCTT 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 338 ATCAGCCCGGTTCGCCGGAATCCCTAGCTACAAGAGATTTCTCAGCTAGTGGACTTTCTT 397
Query 121 CTCGAAATGGCGGAGGCGATTGGGATTCGAAATTGGAAGATATTCAAGTCGATGAAGCTG 180
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 398 CTCGAAACGGAGGAGGCGATTGGGATTCCAAATTGGAAGATATTCAAGTCGATGAAGCTG 457
Query 181 AATCGACTTTAAAGGAAGCTCTATCACTCAACTATGAGGAAGCTAGGGCTTTGTTGGGGA 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 458 AATCGACTTTAAAGGAAGCTCTCTCACTCAACTATGAGGAAGCTAGGGCTTTGTTGGGGA 517
Query 241 GACTTGAATATCAGAGAGGTAATTTCGATGCAGCGCTTCAGGTGTTTAAGGGGATTGACA 300
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||
Sbjct 518 GACTTGAATATCAGAGAGGTAATTTTGATGCAGCACTTCAAGTGTTTAAAGGGATTGACA 577
Query 301 TTAAGGTCTTAACTCCAAGGATAATCAAAGCCATTGTTGAGAGAACTCGTCCTTGCAAAC 360
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 578 TTAAGGTCTTAACTCCAAGGATAATCAAAGCCATTGTTGAGAAAACTCTTCCTTGCAAAC 637
Query 361 CGCGCTCCAAAGTTGTTAGTGTGCCTCCCTGCACAATGTCTATGCATTCAGTCAGTTTAC 420
| ||||| |||| ||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct 638 CACGCTCTAAAGCTGTTATTGTGCCTCCCACCACAATGTCAATGCATTCAGTCAGTTTAC 697
Query 421 TTCTTGAAGCAATCTTGCTTAAAGCTAGATCACTTGAAGAACTCGGCTCTTACCAAGAGG 480
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 698 TTCTTGAAGCAATCTTACTTAAAGCTAGATCACTTGAAGAACTTGGCTCTTACAAAGAGG 757
Query 481 CTGCAGAAGAATGCAAAATAATCCTGGACGTGGTTGAATCTGCACTGCCGAGTGGCATGC 540
|||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 758 CTGCAGAAGAATGCAAAATAATCCTGGACGTGGTTGAAAATGCACTGCCAAGCGGCATGC 817
Query 541 CTGACGGAATCAGCGGATTCTCTAAACTGCAGGACATTTTTCAGAAGGCCCTGGAATTGC 600
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 818 CTGACGGAATCAGCGGATTCGCTAAACTGCAGGATATCTTTCAGAAGGCCCTGGAATTGC 877
Query 601 TTCCTTTACTATGGACCAAAGCGGGGAATCATCATGAAACTATTGCTTCATATCGCCGTG 660
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TTCCTTTACTATGGAAAAAAGCGGGGAATCATCATGAAACTATTGCTTCATATCGCCGTG 937
Query 661 CTTTATCCAGACCATGGAATTTGGATCCCCAGAGGTTAGCTGTTACGCAGAAATCCTTAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CTTTATCCAGACCATGGAATTTGGATCCCCAGAGGTTAGCTGTTACGCAGAAATCCTTAG 997
Query 721 CTTTGGTTTTACTTTACGGGAGTGTTGAGGCATGCCCAAAAGACAACATCGAGGAAGCAA 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 998 CTTTGGTTTTACTTTACGGGAGTGTTGAGGCATGTCCAAAAGACAACATCGAGGAAGCAA 1057
Query 781 TTGTGTTGCTAATGTTACTTGTAAAGAAGATGGTGGTTGGGGACATACAGTGGGATGCAG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1058 TTGTGTTGCTAATGTTACTTGTAAAGAAGATGGTGGTTGGGGACATACAGTGGGATCCAG 1117
Query 841 AGCTCATGGATCATCTCACGTACGCCCTTTCCATGACTGGACAGTTTGAAGTGTTAGCGA 900
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AACTCATGGATCATCTCACTTACGCCCTTTCCATGACTGGACAGTTTGAAGTGTTAGCGA 1177
Query 901 ACTATCTAGAGGAGACTCTTCCAGGTGTTTATACACGCGGGGAGAGATGGTACCTTCTCT 960
||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1178 ACTATCTAGAGCAGACTCTTCCGGGTGTTTACACCCGCGGGGAGAGATGGTACCTTCTCT 1237
Query 961 CCCTTTGTTACAGTGCTGCTGGGATCGATACAGCAGCCATCAATCTATTAAAGATGGCCC 1020
|||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 1238 CCCTTTGTTACAGTGCTGCTGGGATCGATAAAGCGGCCATTAATCTATTAAAGATGGCCC 1297
Query 1021 TAGGCCCTTCTGAATCAAGACAAATACCACACATTCC-TTGGTTATTGTTTGGAGCAAAG 1079
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1298 TAGGCCCATCTGAATCAAGACAAATACCACACATTCCGTT-GTTATTGTTTGGAGCAAAG 1356
Query 1080 CTGTGCTCTAAAGATCCAAAACACTCAAGGGACGGCATAAATTTCT-CTCATAGGCTGCT 1138
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1357 CTGTGCTCTAAAGATCCAAAACACTCAAGGGACGGCATAAATTT-TGCTCATAGGCTGCT 1415
Query 1139 CGACTTGGCAAACAGTCAGAGTGAACATCTTTTGAGTCAAGCACACAAGTTCCTTGGTGT 1198
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1416 CGACTTGGGAAACAGTCAGAGTGAACATCTTTTGAGCCAAGCACACAAGTTCCTTGGTGT 1475
Query 1199 GTGCTATGGAAACGCTGCAAGAAGTTCCAAATTAGACTCTGAACGGGTTTTCCTTCAGAA 1258
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1476 ATGCTATGGAAACGCTGCAAGAAGTTCTAAATTAGACTCTGAACGGGTTTTTCTTCAGAA 1535
Query 1259 AAAATCTCTGTTCTCTTTAAATGAAGCAGCAAAGAGGGGCAAGGCTGATCCGGAACTAGA 1318
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1536 AAAATCTCTGTTCTCTTTAAATGAAGCAGCAAAGAGGGGTAAGGCTGATCCGGAACTAGA 1595
Query 1319 CGTTATATTTAACCTAAGCGTTGAGAATGCAGTTCAAAGAAATGTTCAGGCGGCTTTGGA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 CGTTATATTTAACCTAAGCGTTGAGAATGCAGTTCAAAGAAATGTTCAGGCGGCTTTGGA 1655
Query 1379 TGGTGCGGTTGAGTATTCTAGTATGGTGGGAGGAGTTTCAACTAAAGGATGGAAACATTT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 TGGTGCGGTTGAGTATTCTAGTATGGTGGGAGGAGTTTCAACTAAAGGATGGAAACATTT 1715
Query 1439 AGCTATTGTCCTTTCAGCGGAGAAACGGCTCAAGGATGCTGAATCAATTCTGGACTTCAC 1498
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1716 AGCTATTGTCCTTTCAGCGGAGAAACGGCTCAAGGATGCTGAATCAATACTGGACTTCAC 1775
Query 1499 CATGGAAGAGGCTGGTGACCTTGAAAAGTTAGAGCTTCTGAAGTCAAAAGCTATGCTTCA 1558
||||||||||||||||||| |||||||| |||||||||||| || ||||||| |||||||
Sbjct 1776 CATGGAAGAGGCTGGTGACATTGAAAAGATAGAGCTTCTGAGGTTAAAAGCTGTGCTTCA 1835
Query 1559 GATGGCTCAAGAACAACCTAAGCAGGCAATGAAGACATGCAGCAGCTTGCTGGGCCTAAT 1618
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 1836 GATGGCTCAAGAACAACCTAAAAAGGCAATGAAGACATGCAGCAGCTTACTGGGACTAAT 1895
Query 1619 TCGAGCGCAAGAGAAATCTGAA-AAGTCCGAG-GCTCTGCTACAGAAATTTGAAACGGAA 1676
|||||||||||||||||||||| || |||||| | |||||||||||||||||||||||||
Sbjct 1896 TCGAGCGCAAGAGAAATCTGAACAA-TCCGAGAG-TCTGCTACAGAAATTTGAAACGGAA 1953
Query 1677 GCTTGGCAAGACCTGGCCTCTGTCTATGGAAAGCTAGGTTCATGGTCAGATGCAGAAACA 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 GCTTGGCAAGACCTGGCCTCTGTCTATGGAAAGCTAGGTTCATGGTCAGATGCAGAAACA 2013
Query 1737 TGTCTCGAGAAGGCAAGATCCATGTGCTATTATTCTCCCAGAGGCTGGAATGAAACAGGT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 TGTCTCGAGAAGGCAAGATCCATGTGCTATTATTCTCCCAGAGGCTGGAATGAAACAGGT 2073
Query 1797 TTGTGTTTAGAAGCCAAATCACTTCATGAAGAGGCTTTAACATCCTTCTTCCTCTCACTC 1856
|||||| ||||||| ||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 2074 TTGTGTCTAGAAGCTAAATCACTTCATGAAGAGGCTTTAATATCCTTCTTCCTTTCGCTC 2133
Query 1857 TCGATCGAACCAGATCACGTACCCAGCATTGTTTCAATAGCAGAGGTTATGATGAAATCC 1916
||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 2134 TCGATCGAACCAGATCACGTACCTAGCATTGTTTCTATAGCAGAGGTCATGATGAAATCT 2193
Query 1917 GGGGGTGAATCACTTCCAACCGCTAAAAGTTTTCTGATGAATGCCTTAAAATTAGACCCG 1976
|| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2194 GGAGATGAATCACTTCCAACCGCTAAAAGTTTTCTGATGAATGCCTTAAGGTTAGACCCG 2253
Query 1977 AGAAATCACGATGCATGGATGAAGCTAGGGCACGTTGCAAAGAAGCAAGGCATGTCACAG 2036
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2254 AGAAATCATGATGCATGGATGAAGCTAGGGCACGTTGCAAAGAAGCAAGGCTTGTCACAG 2313
Query 2037 CAAGCTGCAGAGTTTTACCAAGCTGCATATGAACTAGAGCTATCCGCTCCAGTACAGAGT 2096
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2314 CAAGCTGCAGAGTTTTACCAAGCTGCATATGAACTAGAACTATCCGCTCCGGTACAGAGT 2373
Query 2097 TTCATTTGAC 2106
||||||||||
Sbjct 2374 TTCATTTGAC 2383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105370943955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5