BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921787 Length=586 Score E Sequences producing significant alignments: (Bits) Value AT1G27490.1 | Symbols: | F-box and associated interaction doma... 204 9e-52 AT3G17560.1 | Symbols: | F-box and associated interaction doma... 86.1 3e-16 > AT1G27490.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:9546373-9547073 REVERSE LENGTH=495 Length=495 Score = 204 bits (110), Expect = 9e-52 Identities = 184/219 (84%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 352 GTTTCTTGGCCGACAAACAGCACAAAGTTGTAGTGT-TCTGCGAGAGGTACT-GTAATCT 409 |||||||||||||| ||||| | ||||||||||||| | ||| || || || | | || Sbjct 281 GTTTCTTGGCCGACGAACAGAATAAAGTTGTAGTGTGT-TGCAAGTGGCGCTCGGATTC- 338 Query 410 CAACAATACCATTTACTTTGTGGGAGAAAATAAACACGTACAAGTGGATTGTCATGGTGG 469 || ||||||||||||||| |||||||||||||||||||||||||||||| | | |||| Sbjct 339 CATCAATACCATTTACTTCGTGGGAGAAAATAAACACGTACAAGTGGATCAACGTCGTGG 398 Query 470 AGAT-TCAACACTCAGATTATCTTACTCACTTCTTATGAATTATGTTCCAAGTTTGGCT- 527 |||| | | ||||| || ||||| ||| ||||||||||||||||||||||||| | | Sbjct 399 AGATCTTA-CACTCGGACAATCTTGCTCGTTTCTTATGAATTATGTTCCAAGTTTCG-TA 456 Query 528 CAAATTCAACAAGGTACAGTTCTTCCACCACGCACATGA 566 ||||| |||||||||||| ||||| |||||||||||||| Sbjct 457 CAAATCCAACAAGGTACACTTCTTGCACCACGCACATGA 495 > AT3G17560.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6006762-6008003 FORWARD LENGTH=1242 Length=1242 Score = 86.1 bits (46), Expect = 3e-16 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 215 CTTTCACTGCGATGGTTTATTGCTATGCACCACCAAGGACAATAGACTCGTGGTTTGGAA 274 ||||||||| ||||||||||||||||||||||||||||| || || | ||||||| ||| Sbjct 333 CTTTCACTGTGATGGTTTATTGCTATGCACCACCAAGGAAAACCGATTAGTGGTTTTGAA 392 Query 275 TCCATGTTCAGGAG-AAACCAAGTGG 299 || | |||||| | ||||||| ||| Sbjct 393 CCCGTTTTCAGG-GCAAACCAAATGG 417 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28181356467 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5