BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921787

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27490.1 | Symbols:  | F-box and associated interaction doma...   204    9e-52
  AT3G17560.1 | Symbols:  | F-box and associated interaction doma...  86.1    3e-16


> AT1G27490.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:9546373-9547073 REVERSE LENGTH=495
Length=495

 Score =  204 bits (110),  Expect = 9e-52
 Identities = 184/219 (84%), Gaps = 8/219 (4%)
 Strand=Plus/Plus

Query  352  GTTTCTTGGCCGACAAACAGCACAAAGTTGTAGTGT-TCTGCGAGAGGTACT-GTAATCT  409
            |||||||||||||| ||||| | ||||||||||||| | ||| || ||  || | | || 
Sbjct  281  GTTTCTTGGCCGACGAACAGAATAAAGTTGTAGTGTGT-TGCAAGTGGCGCTCGGATTC-  338

Query  410  CAACAATACCATTTACTTTGTGGGAGAAAATAAACACGTACAAGTGGATTGTCATGGTGG  469
            || ||||||||||||||| ||||||||||||||||||||||||||||||   | | ||||
Sbjct  339  CATCAATACCATTTACTTCGTGGGAGAAAATAAACACGTACAAGTGGATCAACGTCGTGG  398

Query  470  AGAT-TCAACACTCAGATTATCTTACTCACTTCTTATGAATTATGTTCCAAGTTTGGCT-  527
            |||| | | ||||| ||  ||||| |||  ||||||||||||||||||||||||| | | 
Sbjct  399  AGATCTTA-CACTCGGACAATCTTGCTCGTTTCTTATGAATTATGTTCCAAGTTTCG-TA  456

Query  528  CAAATTCAACAAGGTACAGTTCTTCCACCACGCACATGA  566
            ||||| |||||||||||| ||||| ||||||||||||||
Sbjct  457  CAAATCCAACAAGGTACACTTCTTGCACCACGCACATGA  495


> AT3G17560.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:6006762-6008003 FORWARD LENGTH=1242
Length=1242

 Score = 86.1 bits (46),  Expect = 3e-16
 Identities = 73/86 (85%), Gaps = 2/86 (2%)
 Strand=Plus/Plus

Query  215  CTTTCACTGCGATGGTTTATTGCTATGCACCACCAAGGACAATAGACTCGTGGTTTGGAA  274
            ||||||||| ||||||||||||||||||||||||||||| ||  || | ||||||| |||
Sbjct  333  CTTTCACTGTGATGGTTTATTGCTATGCACCACCAAGGAAAACCGATTAGTGGTTTTGAA  392

Query  275  TCCATGTTCAGGAG-AAACCAAGTGG  299
             || | |||||| | ||||||| |||
Sbjct  393  CCCGTTTTCAGG-GCAAACCAAATGG  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5