BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921800
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27600.1 | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar... 2095 0.0
> AT1G27600.1 | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar
transferases superfamily protein | chr1:9603553-9606101 REVERSE
LENGTH=1742
Length=1742
Score = 2095 bits (1134), Expect = 0.0
Identities = 1198/1229 (97%), Gaps = 3/1229 (0%)
Strand=Plus/Plus
Query 1 CGGTGGAGTGAGATTATCTGATGGCGTCAATCCGGCGAACTCTCTCGCCGATGTATCACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CGGTGGAGTGAGATTATCTGATGGCGTCAATCCGGCGAACTCTCTCGCCGATGTATCACG 260
Query 61 ATCGTTCTCACGAGAATGGAGGTTCACACAAGGGTTTCACCATTGGTGGTAGTAGCAGTA 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 261 ATCGTTCTCACGAGAATGGAGGTTCACACAAAGGTTTCACCATTGGTGGTAGTAGCAGCA 320
Query 121 AACACAATTCTTCGCAATTTCTTTCGTATCTCACCAAACTCCTCGGAGTAACATCTGATC 180
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 321 AACACAATTCTTCGCAATTTCTTTCGTATCTCACCAAGCTCCTCGGAGTAACGTCTGATC 380
Query 181 CTAAAAGCTCGCGTAGAGGTCCATGGCGGCGACCGTTTTACCAGTTTCTCGTCTTCTTTC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 381 CTAAAAGCTCGCGTAGAGGTCCATGGAGGCGACCGTTTTACCAGTTTCTCGTCTTCTTTC 440
Query 241 TTCTTGGATTTGTATTAGGTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTCTTGGATTTGTATTAGGTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCG 500
Query 301 ATCGATTCTCCTTCGAGATCAAACAGCCCTACGTTGAAGAACGGTTGGATAACAACAAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 501 ATCGATTCTCCTTCGAGATCAAACAGCCCTACGTTGAAGAACGGTTGGA-AA-AT-AGGA 557
Query 361 AACGGGAAGAGGTAGCTGTAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGG 420
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AACGGGAAGAAGCAGCTGTAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGA 617
Query 421 AGGAGGTCAATTTTGTGCCGAAGAAGCTTATAATTGTGGTCACACCAACGTATAATCGAG 480
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 618 AGGAGGTCAATTTTGTGCCGAAGAAGCTTCTAATTGTGGTCACACCAACGTATAATAGAG 677
Query 481 CGATGCAGGCGTATTACTTGAACAGGATTGCTCAAACGCTGAGACTTGTTGAGTCGCCTG 540
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 678 CGATGCAGGCGTATTACTTGAACAGGGTTGCTCAAACGCTGAGACTAGTTGAGTCGCCTG 737
Query 541 TGCTGTGGATAGTGGTGGAGGGTAACGTGGCGTCGTTTGAAACCTCAGAGATTCTGAGGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TGCTGTGGATAGTGGTGGAGGGTAACGTGGCGTCGTTTGAAACCTCAGAGATTCTGAGGA 797
Query 601 AGACGGGAGTGATGTACAGGCACTTGGTTTGCAAGAGGAACATGACGAGTATTAAGGATA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 798 AGACGGGAGTGATGTACAGGCACTTGGTTTGCAAGAGGAACATGACGAGTATCAAGGATA 857
Query 661 GAGGAGTTCATCAGAGAAACACCGCATTGGAACATATTGAGTTGCATAAGCTTGATGGAA 720
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 858 GAGGAGTGCATCAGAGAAACACTGCATTGGAACATATTGAGTTGCATAAGCTTGATGGAA 917
Query 721 TTGTCTACTTTGCTGATGATGACAATATCTACTCGCTTGAGCTCTTTCAAAGCTTAAGAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 918 TTGTCTACTTTGCTGATGATGACAATATCTACTCGCTTGAGCTCTTTCAAAGCTTGAGAC 977
Query 781 AAATCAGCCGATTTGGAACATGGCCTGTTGCGATGCTCGCACCAAGCAAAAACAAGGCCA 840
|||||||||||||||| || ||||||||||| |||||||||| |||||||||||||||||
Sbjct 978 AAATCAGCCGATTTGGGACTTGGCCTGTTGCTATGCTCGCACAAAGCAAAAACAAGGCCA 1037
Query 841 TCCTTGAAGGTCCAGTATGCAATGGAAGTCAAGTAATAGGATGGCACACTAATGAAAAGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TCCTTGAAGGTCCAGTATGCAATGGAAGTCAAGTAATAGGATGGCACACTAATGAAAAGA 1097
Query 901 GTAAAAGACTACGGAGGTTCCATGTTGATATGTCGGGATTTGCTTTTAACAGCACTATAC 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GTAAAAGACTAAGGAGGTTCCATGTTGATATGTCGGGATTTGCTTTTAACAGCACTATAC 1157
Query 961 TCTGGGACCCTAAAAGGTGGCGACGTCCCTTTTCACATCCAACCCGCCAACTGGACACAG 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1158 TCTGGGACCCTAAAAGGTGGCGACGTCCCTTTTCACATCCAACCCGCCAACTAGACACAG 1217
Query 1021 TGAAGGAGGGCTTCCAGGAGACATCATTTATAGAGCAGGTGGTGGCTGATGAAAGCGAGA 1080
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TGAAGGAGGGTTTCCAGGAGACATCATTTATAGAGCAGGTGGTGGCTGATGAAAGCGAGA 1277
Query 1081 TGGAAGGTGTTCCACCAGCTTGCTCGAGGATACTGAACTGGCATCTTCACTTGGATGCCC 1140
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1278 TGGAAGGTGTTCCACCAGCTTGCTCGAGTATACTGAACTGGCATCTTCACTTGGATGCCC 1337
Query 1141 TGGATGTCCCTTATCCACAAGGGTGGGCGATCCAAAAGAATCTCCAAGCTCTCATAACTA 1200
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1338 TGGATGTCCCTTATCCACAAGGGTGGGCGATCCAAAAGAATCTGCAGGCTCTCATAACTA 1397
Query 1201 TGAAATAGTTTGAAGATAGTTTTGACTGG 1229
|||||||||||||||||||||||||||||
Sbjct 1398 TGAAATAGTTTGAAGATAGTTTTGACTGG 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60391255635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5