BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921808
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 159 4e-38
> AT1G27610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
4 leaf senescence stage, petal differentiation and expansion
stage, D bilateral stage; Has 1 Blast hits to 1 proteins
in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:9607111-9607577 REVERSE LENGTH=345
Length=345
Score = 159 bits (86), Expect = 4e-38
Identities = 108/119 (91%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 221 GCAACTATCAACCCGAATCTGATCCCGACAAACCCTTCTCCACTGAGGATGAGAAGTGGA 280
||||||||||||| ||| ||| || ||||||||||||||||| |||||||||||||||
Sbjct 28 GCAACTATCAACCAGAAGAAGATTCCTACAAACCCTTCTCCACTAAGGATGAGAAGTGGA 87
Query 281 TCCGCGAGGAATTCAGCAAAGAAGAAGAAGATCCTAAGAAGCTCTTCGACCTTTACAAG 339
||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 88 TCCGCGAGGAATTCAACAAAAAAGAAGAAGATCCTAAGAAGCTCTTCGAGCTTTTCAAG 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5