BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921809

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26940.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-...   324    6e-88


> AT1G26940.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-trans 
isomerase family protein | chr1:9343126-9345145 FORWARD 
LENGTH=931
Length=931

 Score =  324 bits (175),  Expect = 6e-88
 Identities = 223/245 (91%), Gaps = 8/245 (3%)
 Strand=Plus/Plus

Query  2    CGCCAACTTCTAAACACAAATGGGAAACATGAGAATCTTGATCGTGGGTTTGGCTTGTTT  61
            ||||||||||||||| |||||||||| || ||||| ||||||| ||||||||||||||||
Sbjct  49   CGCCAACTTCTAAACGCAAATGGGAATCACGAGAAACTTGATCCTGGGTTTGGCTTGTTT  108

Query  62   AGCCTTTGTCTCCATTGTTAAAGCTCTATCTCATGAACCAGAACTTGGTTCGGCTCGTGT  121
            ||||||||||||||||| |||||||||  ||||||||||||||||||| |||||||||||
Sbjct  109  AGCCTTTGTCTCCATTGCTAAAGCTCTGCCTCATGAACCAGAACTTGGCTCGGCTCGTGT  168

Query  122  CGTCTTCCAGACTAGTTATGGAGATATCGG-TTT-----CTATCCCACTGCTG-CACCGA  174
            |||||||||||||||||||||||||||||  |||     ||||||||||| || |||| |
Sbjct  169  CGTCTTCCAGACTAGTTATGGAGATATCGAATTTGGGTTCTATCCCACTG-TGGCACCCA  227

Query  175  AGACAGTGGACCATATCTTCAAGCTTGTTCGTTTAGGAGGCTACAACACTAATCATTTCT  234
            |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  228  AGACAGTGGATCACATCTTCAAGCTTGTTCGTTTAGGAGGATACAACACTAATCATTTCT  287

Query  235  TCAGG  239
            |||||
Sbjct  288  TCAGG  292


 Score =  124 bits (67),  Expect = 6e-28
 Identities = 69/70 (99%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  362  GAGCTGTGAAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTGTTGTGGAGGT  421
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  658  GAGCTGTGAAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTTTTGTGGAGGT  717

Query  422  CGAAAGACAG  431
            ||||||||||
Sbjct  718  CGAAAGACAG  727



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5