BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921810

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27600.1 | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar...   455    1e-127


> AT1G27600.1 | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar 
transferases superfamily protein | chr1:9603553-9606101 REVERSE 
LENGTH=1742
Length=1742

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 274/287 (95%), Gaps = 3/287 (1%)
 Strand=Plus/Plus

Query  1    GTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCGATCGATTCTCCTTCGAGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  459  GTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCGATCGATTCTCCTTCGAGA  518

Query  61   TCAAACAGCCCTACGTTGAAGAACGGTTGGATAACAACAAGAAACGGGAAGAGGTAGCTG  120
            ||||||||||||||||||||||||||||||| || |  | |||||||||||| | |||||
Sbjct  519  TCAAACAGCCCTACGTTGAAGAACGGTTGGA-AA-AT-AGGAAACGGGAAGAAGCAGCTG  575

Query  121  TAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGGAGGAGGTCAATTTTGTGC  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  576  TAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGAAGGAGGTCAATTTTGTGC  635

Query  181  CGAAGAAGCTTATAATTGTTGTCACACCAACGTATAATCGAGCGATGCAGGCGTATTACT  240
            ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  636  CGAAGAAGCTTCTAATTGTGGTCACACCAACGTATAATAGAGCGATGCAGGCGTATTACT  695

Query  241  TGAACAGGATTGCTCAAACGCTGAGACTTGTTGAGTCGCCTGTGCTG  287
            |||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct  696  TGAACAGGGTTGCTCAAACGCTGAGACTAGTTGAGTCGCCTGTGCTG  742



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5