BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921812
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27620.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2143 0.0
> AT1G27620.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:9608418-9610542 FORWARD LENGTH=1465
Length=1465
Score = 2143 bits (1160), Expect = 0.0
Identities = 1299/1367 (95%), Gaps = 5/1367 (0%)
Strand=Plus/Plus
Query 3 GaaaaaaaTAAACGGAGGATGGAAGAACTGCCGGATTGCTTGTACGAGGGAAACCAACCA 62
|||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 9 GAAAAATATAAACGGAGGATGCAAGAACTGCCGGATTGTTTGTACGAGGAAAACCAACCA 68
Query 63 ACCAGAATAACTCCTTCATCTCCCACACCAAATCACTCTCTCTACCTTTCCAACCTCGAC 122
||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 69 ACCTTAATAACTCCTTTATCTCCCACACCAAATCACTCTCTCTACCTTTCAAACCTCGAC 128
Query 123 GACCATCATTTTCTCAGATTCTCTATCAAGTATCTTTACCTTTTCGAAAATTCTATTTCC 182
|||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||
Sbjct 129 GACCATCATTTTCTCAGATTCTCTATCAAGTACCTTTACCTTTTCCAAAAATCTATATCC 188
Query 183 CCTCTCACCCTGAAAGATTCTCTCTCTAGGGTTCTAGTTGATTACTACCCTTTCGCGGGT 242
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 189 CCTCTCACCCTGAAAGATTCGCTCTCTAGGGTTCTAGTTGATTACTACCCTTTCGCGGGT 248
Query 243 CGGATAAGAGTCTCCGATGAAGGGAGCAAGCTCGAGGTAGACTGTAATGGGGAAGGCGCG 302
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 249 CGGATAAGAGTCTCCGATGAAGGGAGCAAGCTCGAGGTAGACTGTAATGGAGAAGGCGCA 308
Query 303 GTTTTCGCAGAAGCTTTCATGGATATAACTTGTCAAGAGTTTGTTCAGCTTTCTCCTAAA 362
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 309 GTTTTCGCAGAAGCTTTCATGGATATAACTTGTCAAGATTTTGTTCAACTTTCTCCCAAA 368
Query 363 CCAAACAAGTCTTGGAGGAAGCTCTTGTTCAAGGTTCAAGCTCAGAGTTTCTTGGATATT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CCAAACAAGTCTTGGAGGAAGCTCTTGTTCAAGGTTCAAGCTCAGAGTTTCTTGGATATT 428
Query 423 CCTCCTCTTATCATACAGGTGACGTATCTTCGTTGTGGGGGTATGATCCTCTGCATCGCG 482
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 429 CCTCCTCTTGTCATACAGGTGACGTATCTCCGTTGTGGGGGTATGATCCTCTGCACCGCG 488
Query 483 ATCAATCATTGCCTCTGCGACGGCATTGGCACATCGCAGTTCCTACATGCATGGGCCCAT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 ATCAATCATTGCCTCTGCGACGGCATTGGCACATCGCAGTTCCTACATGCATGGGCCCAT 548
Query 543 GCGACCACTAGCCAAGCTCATCTTCCGACCCGACCATTTCACTCCCGTCACGTGTTAGAT 602
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 549 GCGACCACTAGCCAAGCTCATCTTCCGACCCGACCATTCCACTCCCGTCACGTATTAGAT 608
Query 603 CCGCGAAACCCTCCCCGTGTCACACACTCACATCCCGGTTTCACCCGAACTACCACCGTA 662
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 609 CCGCGAAACCCTCCACGTGTCACACACTCACATCCCGGTTTCACCCGAACCACCACCGTA 668
Query 663 GACAAAGGCTCCACCTTCGACATTTGCAAGCATTTACAGTCCCAACCATTGGCTCCCGCC 722
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 669 GACAAAAGCTCCACCTTCGACATTTCCAAGTATTTACAGTCCCAACCATTGGCTCCTGCC 728
Query 723 ACCTTAACCTTCACCCAATCTCATCTCGTACGCTTAAAGAAAACATGCGTTCCTTCGCTA 782
||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct 729 ACCTTAACCTTCAACCAATCTCATCTCCTACGCTTAAAGAAAACCTGCGCTCCTTCGCTA 788
Query 783 AAATGCACCACGTTCGAGGCACTAGCGGCTCACACTTGGCGCTCGTGGGCTCAATCTCTT 842
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 789 AAATGCACCACGTTCGAGGCACTAGCGGCTAACACTTGGCGCTCGTGGGCTCAATCTCTA 848
Query 843 GAGTTACCATTGACCATGCTGGTCAAACTCTTATTCTCTGTCAATATGAGGAAAA-GACT 901
|| |||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 849 GATTTACCAATGACCATGCTGGTCAAACTCTTATTCTCAGTCAATATGAG-AAAACGACT 907
Query 902 AACTCCAGAACTTCCCCAAGGGTATTACGGTAATGGATTCGTACTAGCTTGCGCCGAGAG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AACTCCAGAACTTCCCCAAGGGTATTACGGTAATGGATTCGTACTAGCTTGCGCCGAGAG 967
Query 962 CAAGGTACAAGACCTAGTCAATGGTAATATTTACCACGCAGTAAAATCGATACAAGAGGC 1021
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 968 CAAGGTACAAGACCTAGTCAATGGTAATATTTACCACGCTGTAAAATCGATACAAGAGGC 1027
Query 1022 GAAATCTAGAATCACTGACGAATATATAAGATCAACGATAGATTTACTGGAAGATAAAAC 1081
||||| ||||| || ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1028 AAAATCAAGAATTACCGACGAATATGTAAGATCAACGATAGATTTACTGGAGGATAAAAC 1087
Query 1082 AGTGAAAACAGACGTCTCATGCAGTTTGGTCATTTCACAATGGGCGAAACTGGGATTAGA 1141
|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1088 GGTGAAAACGGACGTCTCGTGCAGTTTGGTCATTTCACAATGGGCGAAATTGGGATTAGA 1147
Query 1142 GGAGTTGGACTTGGGAGGAGGAAAGCCAATGTATATGGGTCCTTTGACGAGTGATATCTA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GGAGTTGGACTTGGGAGGAGGAAAGCCAATGTATATGGGTCCTTTGACGAGTGATATCTA 1207
Query 1202 CTGTTTATTTTTACCTGTCGCGAGGGATAATGATGCCATTAGGGTTCAAATATCGCTGCC 1261
||||||||||||||| || ||||| |||||||||||||| || |||||||| || |||||
Sbjct 1208 CTGTTTATTTTTACCCGTGGCGAGCGATAATGATGCCATCAGAGTTCAAATGTCCCTGCC 1267
Query 1262 AGAGGATGTTGTGAAGAGACTAGAGTATTGCATGGTTAAGTTTTTAGACGAGAAA-GATA 1320
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1268 GGAGGAAGTTGTGAAGAGACTAGAGTATTGCATGGTTAAGTTTTTAGACG-GAAAAGATA 1326
Query 1321 ACGAAGATGAGAATTCTCGTGCAAAATAAAGTTTTCTTTATAGATTT 1367
||||||||||||||||||||||| |||||||| || |||| ||||
Sbjct 1327 ACGAAGATGAGAATTCTCGTGCATGCTAAAGTTT-CTATATACATTT 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419331935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5