BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921816
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 555 3e-157
> AT1G27670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G75360.1);
Has 35 Blast hits to 35 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9627572-9628496
REVERSE LENGTH=925
Length=925
Score = 555 bits (300), Expect = 3e-157
Identities = 388/429 (90%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 390 TCCTCCCCCACCGTAGTATCAAAATCTTTGGCATC---T------GAAAAGACTTCAGAA 440
|||||| || ||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 372 TCCTCCTCCGCCGTAGTATCACAATCTTTGGCATCTGATAGCGAAGAAAAGACTTCAGAA 431
Query 441 GGAATGCAAGGTACGG-ACTTTACCTCCGTTAGTCTAACCGCCGGAGAGGCTCGACCAAT 499
||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||| |
Sbjct 432 GGAATGCCGGGTACGGAAC-TTACCTCCGTTAGTCTAACCGTCGGAGAGGCTCGACCGTT 490
Query 500 GAAGCGAGAGATGGTCCGGGCGGTAAGTTCTGTGGGGGAGACAGCTCATGCTATAAGGAG 559
|| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 491 GAGGCGAGAGATGGTTCGGGCGGTCAGTTCTGTGGGGGAGACAGCTCATGCTATAAGGAG 550
Query 560 GAAGCGTGAAATGACTTTTCTGCGTCCAGCTACTACTGAGAGTACTGCTACTGATCATCA 619
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 551 GAAGCAAGAAATGACTTTTCTGCCTCCAGCTACTACTGAGAGTACTGCTACTGATCATCA 610
Query 620 TGTTTATAGAAGGTCGAGATCGGAGAGGATTGACGTGCGGGGAGATCTACACCGGAGTAT 679
||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 611 GGTTTACAGAAGGTCGAAATCGGAGAGGATTGACGTGCGGGGAGATTTACGCCGGAGTAT 670
Query 680 GAGACGGTTGTGTGATATCGATGATCTGAGCAGCGATGAGTTTAGGTCAACGGTGGAGAC 739
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 671 GAGACGGTTGTGCGATATGGATGATCTGAGCAGTGATGAGTTTAGGTCAACGGTGGAGAC 730
Query 740 GTTTATAGCAGGAAAAAAGAAGATGTTGTCCAAGGAATGGGTGAAGCCGTGATTTATTAC 799
||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 731 GTTTATAGCCGGAAAAAAAAAGATGTTGTCGAAGGAATGGGTTAAGCCGTGACTTATTAT 790
Query 800 AATTAGGAA 808
|| |||||
Sbjct 791 AACGAGGAA 799
Score = 459 bits (248), Expect = 2e-128
Identities = 280/296 (95%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 43 ATGTTGCGGCTGAGAAAGTTGACGCCATGAGGAGGTTCGAGGGGAGGAGAAATTTTTTGA 102
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 88 ATGTTGCGGCTGAGAAAGTTGACGCCATGAGGAGGTTCGAGGGTACGAGAATTTTTTTGA 147
Query 103 AGTTTCTTCCGGCAGTTGGAGCTCTCGTTGCAGTGTTACTTGTACTATATTGGTTAACGT 162
| |||||||||||||||| |||||| ||||| ||||||||| |||| |||||||||||||
Sbjct 148 ACTTTCTTCCGGCAGTTGAAGCTCTAGTTGCCGTGTTACTTCTACTCTATTGGTTAACGT 207
Query 163 CAACTTTCTTCGCCGGTGAGTATCTCCGGAGTATTATTTCCAGTGGTTTGACCGGCGCCG 222
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 208 CAACTTTCTTCGCCGGTGAGTATCTCCGGCGTATTATTTCCAGTGGTATGACCGGCGCCG 267
Query 223 GAATATACATATTTGGCGTCGTGAACGTTCTCATCGCCCTGATCTTCTCTTTATCTAACC 282
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 268 GAATATACATATTTGGCGTCGTGAACGTTCTCGTTGCCCTGATCTTCTCTTTATCTAACC 327
Query 283 ACCAGAAGCTAACCGAACACGATCTGTATTTTCAATACGTTTCTTCCTCGGCCGCC 338
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 328 ACCAGAAGCTAACCGAACACGATCTGTATTTTCAATACGTTTCCTCCTCCTCCGCC 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5