BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921835
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27820.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 713 0.0
AT1G61470.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 691 0.0
AT1G27890.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 689 0.0
> AT1G27820.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:9691628-9692560 FORWARD
LENGTH=933
Length=933
Score = 713 bits (386), Expect = 0.0
Identities = 633/751 (84%), Gaps = 21/751 (3%)
Strand=Plus/Plus
Query 22 ATGAAGCAAAGTAGTAGTTGTGAAGTTTGGAGATGGAACAAGGAAGCAGAGATGAATGCG 81
|||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1 ATGAAGCAAATTAGTAGCGGTGAAGTTTGGAGATGGAACAAGGAAGTAGAGATGAATTCG 60
Query 82 ATGAGCGATTGTTTGAAACATTGTAGTTTCATCGCTATAGATACAGAGTTTCCGGGATGT 141
|| || |||||||||||||||||||||| ||||||||| || ||||||||||| |||||
Sbjct 61 ATAAGAGATTGTTTGAAACATTGTAGTTCCATCGCTATCGACACAGAGTTTCCCGGATGC 120
Query 142 TTAAAAGAGACTCCCATGGAAGCTAGTGAGGAAACTCGTTACAGAAACATGAAGTACAAT 201
||||| |||||||| ||||| || |||||||||| |||||||||| ||||||||| ||||
Sbjct 121 TTAAAGGAGACTCCGATGGACGCGAGTGAGGAAATTCGTTACAGAGACATGAAGTTCAAT 180
Query 202 GTCGAAAACACCAATCTCATTCAGTTAGGTTTGACAATATTCG-CTG--GAGAATTTTCT 258
|| || |||||| ||||||| ||||||||||| || |||||| | | ||| ||| ||
Sbjct 181 GTGGACAACACCCATCTCATCCAGTTAGGTTTCACGCTATTCGACAGAAGAGGATTCGCT 240
Query 259 AAAACTTGGGAAATTAACTTCTCAGATTTCAACGAGTGGAAG-GACTTGAAGAATGAGAA 317
||||| |||||||| ||||| ||||||||| |||| ||| | ||| || || || ||
Sbjct 241 AAAACCTGGGAAATAAACTTGTCAGATTTCGACGAACATAAGTG-CTTCAAAAACGATAA 299
Query 318 ATCTATCGCGTTTCTGAAAAGTAATGGTCTGGATCTGGAGAAGATCAGAGAGGAAGGAAT 377
|| || |||||||||||||| |||||||| ||||||| ||||||||||||||||| ||
Sbjct 300 GTCCATTGCGTTTCTGAAAAGCAATGGTCTCAATCTGGACAAGATCAGAGAGGAAGGTAT 359
Query 378 TGGAATCGAAGAATTCTTCAAG-GAGTTTACTCAGATGATTCTCAAGGAGAAGGA-GAAG 435
||||||||| |||||||| || || ||| ||| | |||||||| ||||||||| | |
Sbjct 360 TGGAATCGATGAATTCTT-TAGAGACTTTTCTC--A-GATTCTCACGGAGAAGGACGGA- 414
Query 436 AAGATGACTTGGGTGACTTTTCAAGGCTCCTACGACAAGGCTTATCTAGTGAAAGGCTTA 495
||||| |||||||||| |||||||||||| |||||||| |||||||| || |||||||||
Sbjct 415 AAGATAACTTGGGTGAATTTTCAAGGCTCTTACGACAATGCTTATCTCGTTAAAGGCTTA 474
Query 496 ACCGGAGGAAAACCATTGCCGGAGACTTTGGAAGAGTTTGACGAAACGGTTGAG-AGGCT 554
|| ||||| ||||| || ||||||||| |||||||||| |||| || || || | |||
Sbjct 475 ACGGGAGGGAAACCGTTACCGGAGACTAAGGAAGAGTTTCACGAGACCGTCCAGCA-GCT 533
Query 555 TTTGGGAGAACG--TGTTTATGATGTGAAGAAAATGGCTGGATTATGCAGAGGACTAAGT 612
||||||| || | ||||| ||| || |||||||| |||| || |||||| |||||||||
Sbjct 534 TTTGGGA-AA-GTTTGTTTTTGACGTAAAGAAAATCGCTGAATCATGCAGCGGACTAAGT 591
Query 613 AGCCGTTTCGGACTGCAGAGAATAGCAGATGCGTTTCAGATGAGGCGTGTTGGAATGGCT 672
|||| |||||||| ||||||||||| |||| ||| ||||||| |||||||||| |||
Sbjct 592 AGCCAATTCGGACTACAGAGAATAGCTGATGTGTTGCAGATGAAACGTGTTGGAAAAGCT 651
Query 673 CATCACGCTGGCTCAGACAGTGAATTAACGGCTCGTGTCTTCACCAAGTTGACTTTCTAT 732
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||
Sbjct 652 CATCACGCTGGCTCAGACAGTGAATTGACGGCTCGTGTCTTCACTAAGTTGACTTTCGAT 711
Query 733 TTG-TGCA-AG-AGAAACCAGAGTCTAAGAC 760
||| | | || ||||| |||||| ||||||
Sbjct 712 TTGCTTAATAGTAGAAAGCAGAGTGTAAGAC 742
> AT1G61470.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:22678185-22679021 FORWARD
LENGTH=837
Length=837
Score = 691 bits (374), Expect = 0.0
Identities = 639/763 (84%), Gaps = 33/763 (4%)
Strand=Plus/Plus
Query 41 GTGAAGTTTGGAGATGGAACAAGGAAGCAGAGATGAATGCGATGAGCGATTGTTTGAAAC 100
||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||
Sbjct 8 GTGAAGTTTGGAGATGGAACAAGCAAGCAGAGATGAATTCGATAAGAGATTGTTTGAAAC 67
Query 101 ATTGTAGTTTCATCGCTATAGATACAGAGTTTCCGGGATGTTTAAAAGAGACTCCCATGG 160
|||||| || ||||||||| || ||||||||||| ||||| ||||| |||||||||||||
Sbjct 68 ATTGTAATTCCATCGCTATCGACACAGAGTTTCCCGGATGCTTAAAGGAGACTCCCATGG 127
Query 161 AAGCTAGTGAGGAAACTCGTTACAGAAACATGAAGTACAATGTCGAAAACACCAATCTCA 220
| || ||||| |||| |||||| ||| ||||||| | |||||| || |||||| ||||||
Sbjct 128 ACGCAAGTGATGAAATTCGTTATAGAGACATGAAATTCAATGTGGACAACACCCATCTCA 187
Query 221 TTCAGTTAGGTTTGACAATATTC-GCTGGA-GAATTTTCTAAAACTTGGGAAATTAACTT 278
| |||||||| || || ||||| || | ||| | ||||||| ||||| || |||||
Sbjct 188 TCCAGTTAGGGTTAACGCTATTCGGC-AAAGGAA-TCACTAAAACCTGGGAGATCAACTT 245
Query 279 CTCAGATTTCAACGAGTGGAAGGA-CTTGAAGAATGAGAAATCTATCGCGTTTCTGAAAA 337
|||||||||||||| | || || |||||| ||||| |||||||| |||||| | ||||
Sbjct 246 GTCAGATTTCAACGAATCTAA-GAGCTTGAAAAATGATAAATCTATAGCGTTTTTAAAAA 304
Query 338 GTAATGGTCTGGATCTGGAGAAGATCAGAGAGGAAGGAATTGGAATCGAAGAATTCTTCA 397
|||||| |||||||||| ||||||||||| ||||| |||||||||||||| |||||||
Sbjct 305 ACAATGGTTTGGATCTGGATAAGATCAGAGAAGAAGGTATTGGAATCGAAGAGTTCTTCA 364
Query 398 AGGAGTTTACTCAGATGATTCTCAAGGAGAAGGA--GAAGAAGATGACTTGGGTGACTTT 455
||||||| ||| | ||||||||| ||||| | ||| || |||| |||||||||||
Sbjct 365 TGGAGTTTTCTC--A-GATTCTCAATGAGAAACATGGAA-AA-ATGAGATGGGTGACTTT 419
Query 456 TCAAGGCTCCTACGACAAGGCTTATCTAGTGAAAGGCTTAACCGGAGGAAAACCATTGCC 515
||||||||| |||||||| ||||||||| | ||||| |||| | | |||||||||| ||
Sbjct 420 TCAAGGCTCTTACGACAAAGCTTATCTACTTAAAGGTTTAA-C-TA-GAAAACCATTACC 476
Query 516 GGAGACTTTGGAAGAGTTTGACGAAACGGTTGAG-AGGCTTTTGGGAGAACG--TGTTTA 572
||||||| | |||||||||| ||||| || || | |||||| || ||| | ||||||
Sbjct 477 CGAGACTTCGAAAGAGTTTGATGAAACCGTCCAGCA-GCTTTT-GG-GAAGGTTTGTTTA 533
Query 573 TGATGTGAAGAAAATGGCTGGATTATGCAGAGGACTAAGTAGCCGTTTCGGACTGCAGAG 632
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 534 TGATGTGAAGAAAATGGCTGGATTATGCAGCGGACTAAGTAGCCGTTTCGGACTACAGAG 593
Query 633 AATAGCAGATGCGTTTCAGATGAGGCGTGTTGGAATGGCTCATCACGCTGGCTCAGACAG 692
|||||| |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 594 AATAGCGGATGTGTTGCAGATGAGGCGTGTTGGAAAAGCTCATCACGCTGGATCAGACAG 653
Query 693 TGAATTAACGGCTCGTGTCTTCACCAAGTTGACTTTCTATTTG-TGCAA--G-AGAAACC 748
||||| ||||||||||||||||| ||||||| |||| ||||| | ||| | |||||
Sbjct 654 CGAATTGACGGCTCGTGTCTTCACTAAGTTGATTTTCGATTTGGT-CAATAGTAGAAAGG 712
Query 749 AGAGT-CT--AAGAC---CTGATGATCTGCTATATCAACAAGA 785
||||| || |||| ||||||||| || |||||||| |||
Sbjct 713 AGAGTACTGGAAGAAGAGCTGATGATCAGCAATATCAACTAGA 755
> AT1G27890.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:9714136-9715044 REVERSE
LENGTH=909
Length=909
Score = 689 bits (373), Expect = 0.0
Identities = 637/762 (84%), Gaps = 28/762 (4%)
Strand=Plus/Plus
Query 41 GTGAAGTTTGGAGATGGAACAAGGAAGCAGAGATGAATGCGATGAGCGATTGTTTGAAAC 100
||||||||||||||||||||||||||| ||||||| || |||| || |||||||||||||
Sbjct 5 GTGAAGTTTGGAGATGGAACAAGGAAGTAGAGATGGATTCGATAAGAGATTGTTTGAAAC 64
Query 101 ATTGTAGTTTCATCGCTATAGATACAGAGTTTCCGGGATGTTTAAAAGAGACTCCCATGG 160
||| ||||| ||||||||| || ||||||||||| ||||| ||||| |||||||| ||||
Sbjct 65 ATTTTAGTTCCATCGCTATCGACACAGAGTTTCCCGGATGCTTAAAGGAGACTCCGATGG 124
Query 161 AAGCTAGTGAGGAAACTCGTTACAGAAACATGAAGTACAATGTCGAAAACACCAATCTCA 220
| || |||||||||| |||||||||| ||||||||| |||||| || |||||| ||||||
Sbjct 125 ACGCGAGTGAGGAAATTCGTTACAGAGACATGAAGTTCAATGTGGACAACACCCATCTCA 184
Query 221 TTCAGTTAGGTTTGACAATATTCG-CTG--GA-GAATTTTCTAAAACTTGGGAAATTAAC 276
| ||||||||||| || |||||| | | || ||| | ||||||| |||||||| |||
Sbjct 185 TCCAGTTAGGTTTCACGCTATTCGACAGAAGAGGAA-TCACTAAAACCTGGGAAATAAAC 243
Query 277 TTCTCAGATTTCAACGAGTGGAAG-GACTTGAAGAATGAGAAATCTATCGCGTTTCTGAA 335
|| |||||||||||||| ||| | ||| || || || || || || || ||||| ||
Sbjct 244 TTGTCAGATTTCAACGAACATAAGTG-CTTCAAAAACGATAAGTCCATAGCTTTTCTCAA 302
Query 336 AAGTAATGGTCTGGATCTGGAGAAGATCAGAGAGGAAGGAATTGGAATCGAAGAATTCTT 395
||| |||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct 303 AAGCAATGGTCTCAATCTGGACAAGATCGGAGAGGAAGGTATTGGAATCGAAGAATTCTT 362
Query 396 CAAG-GAGTTTACTCAGATGATTCTCAAGGAGAAGGA-GAAGAAGATGACTTGGGTGACT 453
|| || ||| ||| | |||||||||||||||||| | | ||||| |||||||||| |
Sbjct 363 -TAGAGACTTTTCTC--A-GATTCTCAAGGAGAAGGACGGA-AAGATAACTTGGGTGAAT 417
Query 454 TTTCAAGGCTCCTACGACAAGGCTTATCTAGTGAAAGGCTTAACCGGAGGAAAACCATTG 513
||||||||||| |||||||| |||||||| || ||||||||||| ||||| ||||| ||
Sbjct 418 TTTCAAGGCTCTTACGACAATGCTTATCTCGTTAAAGGCTTAACGGGAGGGAAACCGTTA 477
Query 514 CCGGAGACTTTGGAAGAGTTTGACGAAACGGTTGAG-AGGCTTTTGGGAGAACG--TGTT 570
||||||||| |||||||||| |||| || || ||| | |||||||||| || | ||||
Sbjct 478 CCGGAGACTAAGGAAGAGTTTCACGAGACCGTCGAGCA-GCTTTTGGGA-AA-GTTTGTT 534
Query 571 TATGATGTGAAGAAAATGGCTGGATTATGCAGAGGACTAAGTAGCCGTTTCGGACTGCAG 630
| ||| || |||||||| |||| || |||||| |||||||||||||| |||||||| |||
Sbjct 535 TTTGACGTAAAGAAAATCGCTGAATCATGCAGCGGACTAAGTAGCCGATTCGGACTACAG 594
Query 631 AGAATAGCAGATGCGTTTCAGATGAGGCGTGTTGGAATGGCTCATCACGCTGGCTCAGAC 690
|||||||| |||| ||| ||||||| |||||||||| |||||||||||||||||||||
Sbjct 595 AGAATAGCTGATGTGTTGCAGATGAAACGTGTTGGAAAAGCTCATCACGCTGGCTCAGAC 654
Query 691 AGTGAATTAACGGCTCGTGTCTTCACCAAGTTGACTTTCTATTTG-TGCAA--G-AGAAA 746
|||||||| ||||||||||||||||| |||||||||||| ||||| | ||| | |||||
Sbjct 655 AGTGAATTGACGGCTCGTGTCTTCACTAAGTTGACTTTCGATTTGCT-CAATAGTAGAAA 713
Query 747 CCAGAGTCTAAGACCTGATGATC-T--GCTATATCAACAAGA 785
||| || |||||| | ||||| | || |||||||| |||
Sbjct 714 GCAGTGTGTAAGACGAGTTGATCATCAGCAATATCAACTAGA 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5