BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921837
Length=2348
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27910.1 | Symbols: PUB45, ATPUB45 | plant U-box 45 | chr1:9... 3886 0.0
> AT1G27910.1 | Symbols: PUB45, ATPUB45 | plant U-box 45 | chr1:9720736-9724714
REVERSE LENGTH=2879
Length=2879
Score = 3886 bits (2104), Expect = 0.0
Identities = 2266/2346 (97%), Gaps = 3/2346 (0%)
Strand=Plus/Plus
Query 6 CGAGTTATTGAAGCAATGGATGTTAATGAGGTTGAAGAAAATTTCTTTGCCCCCGGTGAT 65
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 332 CGAGTTATTGAAGCAATGGATGTTAATGAGGTTGAAGAAAATTTCTTTGCCCCTGGTGAT 391
Query 66 GCCAAGCTACACGGAGACATGTGCAATGCCCTTTCAGTGATCTACTGCAAGATCATGTCT 125
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GCCAAGCTACACGGAAAAATGTGCAATGCCCTTTCAGTGATCTACTGCAAGATCATGTCT 451
Query 126 ATTTTCCCGTCGCTTGAAGCTGCTCGGCCGAGAAGCAAATCTGGTATTCAAGCTTTGTGT 185
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 452 ATTTTCCCGTCGCTTGAAGCTGCTAGGCCGAGAAGCAAATCTGGAATTCAAGCTTTGTGT 511
Query 186 TCACTTCACGTGGTTTTAGAAAAAGTGAAGAACATTCTACGCCATTGCACTGAATCTAGT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TCACTTCACGTGGTTTTAGAAAAAGTGAAGAACATTCTACGCCATTGCACTGAATCTAGT 571
Query 246 AAACTTTATTTGGCTATAACAGGGGACTCAGTAGTTTTGAAATTTGAGAAGGCGAAATCA 305
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 572 AAACTTTATTTGGCTATAACAGGGGATTCAGTAGTTTTGAAATTTGAGAAGGCGAAATCA 631
Query 306 TCTCTTATAGATAGCCTTAGGCGTGTTGAAGATATAGTCCAACAGTCTATTGGATCTCAG 365
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TCTCTTACAGATAGCCTTAGGCGTGTTGAAGATATAGTCCAACAGTCTATTGGATCTCAG 691
Query 366 CTTTTGGAGATTTTGATGGAGTTAGAGAACACCGAATTTTCACTTGATCCATCAGAGAAG 425
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 692 CTTTTGGAGATTTTGATGGAGTTAGAGAACACCGAGTTTTCACTTGATCCAGCAGAGAAG 751
Query 426 GAAATTGGGGATCAAATCATTGGATTGCTGCAACAAGGGGGGAATTTTGAGATCTCAACT 485
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 752 GAAATTGGCGATCAAATCATTGGATTGCTGCAACAAGGGGGGAATTTTGAGAGCTCATCT 811
Query 486 GATAATAATGAACTTGAGGTTTTCCATCAGGCTGCTACTAGACTAGGTATCACTTCTTCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GATAATAATGAACTTGAGGTTTTCCATCAGGCTGCTACTAGACTAGGTATCACTTCTTCT 871
Query 546 AGAGCAGCTCTCACAGAGCGAAGATGCCTCAAGAAACTCATTGAGAGGGCCCGAATGGAG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 AGAGCAGCTCTCACAGAGCGAAGATGCCTCAAGAAACTCATTGAGAGGGCCCGAATGGAG 931
Query 606 GATGACAAGAGGAAAGAATCAATAGTGGCTTATTTATTACATCTTATGAGGAAATACTCA 665
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 932 GATGACAAGAGGAAAGAATCAATTGTGGCTTATTTATTACATCTCATGAGGAAATACTCA 991
Query 666 AAGCTATTCAGAAGTGAGATTTGGGATGACAATGATTCACAGGGTAGTAGTTCATTGCCT 725
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 992 AAGCTATTCAGAAGTGAGATCTGGGATGACAATGATTCACAGGGTAGTAGTTCATTGCCT 1051
Query 726 TGTTCACCTACTATCCAGGGTTCTCTTGACGATGCCCATGGTCGTGCATTTGACCGTCAG 785
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 1052 TGTTCACCTACTATCCAGGGTTCTATAGACGATGCCCATGGTCGTGCTTTTGACCGTCAG 1111
Query 786 CTGTCAAAACTGAGTTCCTTCAACTTCAGATCTTGCAATAACAATAGGAAATCTTTACAG 845
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |||
Sbjct 1112 CTGTCAAAACTGAGTTCCTTTAACTTCAGATCCTGCAATAACAATAGGAGATCTTCGCAG 1171
Query 846 ATGTCTGTTCCGCCAGAAGAATTGAGGTGTCCAATATCTTTGCAGCTTATGTATGACCCT 905
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1172 ATGTCTGTTCCGCCAGAAGAATTGAGGTGTCCGATATCTTTGCAGCTTATGTATGACCCT 1231
Query 906 GTAATTATCGCGTCTGGGCAAACTTATGAGAGAATCTGTATCGAGAAATGGTTTAGTGAT 965
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1232 GTCATTATCGCGTCTGGGCAAACATATGAGAGAATCTGTATTGAGAAATGGTTTAGTGAT 1291
Query 966 GGACACAACACATGTCCCAAAACTCACCAGCAGCTTTCTCATCTATGCTTGACTCCTAAC 1025
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1292 GGACACAACACATGTCCCAAAACTCACCAGCAGCTCTCTCATCTTTGCTTGACTCCTAAC 1351
Query 1026 TATTGTGTCAAGGCTCTAATTTCTAGCTGGTGTGAACAGAACGGTGTTCAGGCCCCTGAA 1085
|| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1352 TACTGTGTCAAGGCTCTAATTTCTAGCTGGTGTGAACAGAACGGCGTTCAGGTCCCTGAT 1411
Query 1086 GGACCGCCTGAGTCTCTAGACCTTAATTATTGGAGGTTGGCGTTGTCTGTGTCCGAGTCT 1145
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1412 GGACCCCCTGAGTCTCTAGACCTTAACTATTGGAGGTTGGCGTTGTCTGTGTCCGAGTCC 1471
Query 1146 ACCGACACGAGAACAGCAAAACGTGTTGGTTCTTGTAAGTTGAAGGATGTGAAGGTGGTT 1205
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 ACCGATACGAGATCAGCAAAACGTGTTGGTTCTTGTAAGTTGAAGGATGTGAAGGTGGTT 1531
Query 1206 CCTTTGGAAGAAAGTGGAACCATTAAAGAGGAAGCCTGTGAATCAGAATACCAGGATGAT 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1532 CCTTTGGAAGAAAGTGGAACCATTAAAGAGGAAGCCTGTGAATCAGAATACCAGGAAGAT 1591
Query 1266 CAAGTTACTCTTGTTGAAAGATGTACGGAATTGTTGACCACTTTAAGTGAAGTGGATACC 1325
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1592 CAAGTTACTCTTGTTGAAAGATGTACGGAATTGTTGACCACTTTAACTGACGTGGATACC 1651
Query 1326 TTAAGGAAGAAATGCAGAGTTGTTGAGCAGATAAGATTATTGCTAAAAGATGATGAGGAG 1385
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1652 TTAAGAAAGAAATGCAGAGTTGTTGAGCAGATAAGAGTATTGCTAAAAGATGATGAGGAG 1711
Query 1386 GCCAGGATTTTCATGGGGGAAAATGGGTGTGTTGAAGCGTTGCTTCAGTTTCTAGGATCA 1445
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1712 GCCAGGATTCTCATGGGGGAAAATGGGTGTGTTGAAGCGTTGCTTCAGTTTCTGGGATCA 1771
Query 1446 GCTCTTACTGAAAATAACGCTTCAGCCCAGAAAGTTGGAGCCATGGCTCTCTTTAACTTG 1505
||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1772 GCTCTGAATGAAAATAACGCTTCAGCCCAAAAAGTTGGAGCCATGGCTCTCTTTAACTTG 1831
Query 1506 GCTGTGGACAGCAACAGGAACAAGGAGTTGATGCTAGCATCAGGAATTATTCCTCTGCTG 1565
|||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1832 GCTGTGGACAACAACAGGAACAAAGAGTTGATGCTAGCATCAGGAATTATTCCTTTGCTG 1891
Query 1566 GAGGAAATGCTCTGTAATCCACATTCCCATGGTTCAGTGACGGCACTTTATCTGAACCTT 1625
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1892 GAGGAAATGCTCTGTAATCCACATTCCCATGGTTCAGTGACGGCAATTTATCTGAACCTC 1951
Query 1626 TCGTGTCTTGAAGAAGCAAAGCCTGTAATAGGTTCGAGTCTGGCTGTTCCTTTCATGGTA 1685
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1952 TCGTGTCTTGAAGAAGCAAAGCCCGTAATAGGTTCGAGTCTGGCAGTTCCTTTCATGGTA 2011
Query 1686 AATCTTCTTTGGACCGAGACTGAAGTCCAGTGCAAAGTCGATGCCCTTCACTCCCTTTTT 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 AATCTTCTTTGGACCGAGACTGAAGTCCAGTGCAAAGTCGATGCCCTTCACTCCCTTTTT 2071
Query 1746 CACCTGTCCACCTACCCTCCCAATATCCCCTGCCTTTTATCTGCTGACATTGTCAGCGCC 1805
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 2072 CACCTGTCCACCTACCCTCCCAATATCCCCTGCCTTTTATCTGCTGACCTTGTCAACGCC 2131
Query 1806 CTTCAGTCACTCACTATCAGTGATGATCAACGATGGACAGAAAAGTCCTTAGCTGTTCTA 1865
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2132 CTTCAATCACTCACTATCAGTGATGAGCAACGGTGGACAGAAAAGTCCTTAGCTGTTCTA 2191
Query 1866 CTAAATTTGGTTTTGAACGAGGCAGGAAAAGACGAGATGGTTTCAGCACCTGGCCTTGTG 1925
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2192 CTTAATTTGGTATTGAACGAGGCAGGAAAAGACGAGATGGTTTCAGCACCTAGCCTTGTG 2251
Query 1926 AGCAATCTCTGCACCATTCTTGACACGGGTGAACCAAATGAGCAAGAACAAGCTGTTTCT 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2252 AGCAATCTCTGCACCATTCTTGACACGGGTGAACCAAATGAGCAAGAACAAGCTGTTTCT 2311
Query 1986 TTGCTTCTGATATTATGCAATCACAGTGAGATATGTAGCCAGATGGTTTTACAAGAAGGA 2045
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 2312 TTGCTTCTGATATTATGCAATCACAGTGAGATCTGTAGCGAGATGGTTTTACAAGAAGGA 2371
Query 2046 GTGATACCTTCGTTGGTATCTATTTCCGTAAACGGTACTCAACGTGGAAGAGAAAGGGCA 2105
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2372 GTGATACCTTCTTTGGTATCTATCTCCGTAAACGGTACTCAACGTGGAAGAGAAAGGGCA 2431
Query 2106 CAGAAGCTACTGACACTATTCAGGGAACTGAGGCAAAGGGATCAAACCCATCTAACAGAA 2165
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2432 CAGAAGCTACTGACACTATTCAGGGAACTGAGGCAAAGGGATCAAACCCATCTCACAGAA 2491
Query 2166 CCACAGCATACAGTAGTCACAAGCCCCGAGGACGGATTCTCTGTTGCTGCAGCCGCTGTA 2225
|| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2492 CCGCAGCATACAGAAGTCACAAGCCCCGAGGACGGATTCTCTGTTGCTTCAGCCGCTGTA 2551
Query 2226 ACAGAGTCAAAACCGCAATGTAAATCAGCTTCGAGAAAGAAAATGGGAAGAGCATTCAGT 2285
|||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2552 ACAGAGACAAAACCGCAGTGTAAATCAGCCTCGAGAAAGAAAATGGGAAGAGCATTCAGC 2611
Query 2286 TTTCTATGGAAAAGCAAGAGCTTCTCAGTTTACCAGTGTTGAGTC-TGG-TTT-TTACCT 2342
|||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 2612 TTTCTATGGAAAAGTAAGAGCTTCTCAGTTTACCAGTGTTGAGTCATGTCTTTATTACCT 2671
Query 2343 TTAGTT 2348
||||||
Sbjct 2672 TTAGTT 2677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116565665490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5