BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921839
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27930.1 | Symbols: | Protein of unknown function (DUF579) ... 1441 0.0
> AT1G27930.1 | Symbols: | Protein of unknown function (DUF579)
| chr1:9731260-9732719 REVERSE LENGTH=1460
Length=1460
Score = 1441 bits (780), Expect = 0.0
Identities = 865/906 (95%), Gaps = 5/906 (1%)
Strand=Plus/Plus
Query 1 GATCTGAGATCGAAC--AA-AACATGAACACGTTAATCCCATCGGAGAAACGATGGATCA 57
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 318 GATCTGAGATCGAACAAAACAACATGAACACGTTAATCCCATCGGAGAAAAGATGGATCA 377
Query 58 TCACCGGTGTTTTACTCGCGGGTTTAGTTGGCGGTGCTTTACTCTTCACAAGCTTCATAC 117
||||||| |||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct 378 TCACCGGCGTTTTACTAGCCGGTTTAGTTGGCGGTGCTTTGCTTTTCACAAGCTTCATAC 437
Query 118 GAGCCGCTGACGAAACTCTCTTCCTCTGTTCCACCGCGAA-CGCCAAAAGCAGAGCGGTG 176
|||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||
Sbjct 438 GAGCCGCTGACGAAACGCTCTTCCTCTGTTCCACAGC-AAGCGCCAAAAGCAGAGCGGTG 496
Query 177 GCTGCAGCGGCTGATTATTCAGCGACTCCGATCCAGCTTCAAGCGATCGTCCACTACGCG 236
||||| || |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 497 GCTGCGGCAGCTGATTACGAAGCGACTCCGATTCAGCTTCAAGCGATCGTCCACTACGCG 556
Query 237 ACATCTACCGTTGTCCCGCAACAGAATCTTGCTGAGATCTCGATCTCTTTCAACATCTTG 296
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ACATCTAACGTTGTCCCACAACAGAATCTTGCTGAGATCTCGATCTCTTTCAACATCTTG 616
Query 297 AAAAAGCTAGCTCCGGCTAACTTCCTCGTGTTCGGTCTCGGCCGCGACTCGCTCATGTGG 356
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 617 AAAAAGCTAGCTCCGGCTAACTTTCTCGTGTTCGGTCTCGGTCGTGACTCGCTCATGTGG 676
Query 357 GCTTCTTTAAATCCACGTGGGAAAACCTTGTTCTTGGAAGAAGATCTTGAATGGTTTCAG 416
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 677 GCTTCTTTAAATCCACGTGGCAAAACCTTGTTCTTGGAAGAAGATCTTGAATGGTTTCAG 736
Query 417 AAAGTGACCAAAGACTCTCCTTTCTTACGTGCGCATCACGTGCGTTATAGGACGCAGCTT 476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 737 AAAGTGACCAAAGACTCTCCTTTCTTACGTGCGCATCACGTGCGTTACAGGACGCAGCTT 796
Query 477 CAACAAGCCGATTCGCTTCTACGTTCGTACAAAACGGAGCCAAACTGTTTTCCGGCGAAA 536
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 797 CAACAAGCCGATTCGCTTCTACGTTCGTACAAAACGGAGCCTAAGTGTTTTCCGGCGAAA 856
Query 537 TCTTATCTCCGGGGAAACGAGAAGTGTAAGCTAGCTCTCACGGGACTCCCCGATGAGTTC 596
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 857 TCTTATCTCCGGGGAAACGAGAAGTGTAAGCTAGCTCTCACGGGACTGCCCGATGAGTTC 916
Query 597 TACGATACAGAGTGGGATCTGTTAATGCTCGATGCTCCTAAAGGTTACTTCCCTGAAGCT 656
||||||||||||||||||||| | ||| ||||||||||||||||||||||| | ||||||
Sbjct 917 TACGATACAGAGTGGGATCTGCTGATGGTCGATGCTCCTAAAGGTTACTTCGCAGAAGCT 976
Query 657 CCGGGAAGAATGGCGGCGATTTTCTCGGCGGCGGTTATGGCTAGGAACCGGAAGAAACCA 716
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 977 CCGGGAAGAATGGCGGCGATTTTCTCGGCGGCTGTTATGGCTAGGAACCGGAAGAAACCG 1036
Query 717 GGAGTTACGCACGTGTTCTTGCACGACGTTAATCGGAGGGTGGAGAAGACTTTCGCCGAA 776
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1037 GGAGTTACGCACGTGTTCTTGCACGATGTTAATCGGAGGGTGGAGAAGACTTTTGCCGAG 1096
Query 777 GAGTTTTTATGCCGGAAGTATAGAGTCAACGCCGCCGGGAGGTTATGGCATTTCGCTATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1097 GAGTTTTTATGCCGGAAGTATAGAGTCAACGCCGCCGGGAGGTTATGGCATTTTGCTATT 1156
Query 837 CCTCCGGTGGCTGCGAACGCTACGATTGACTCTGGTGATTATAGGTTTTGCTAAGATTGC 896
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CCTCCGGCGGCTGCGAACGCTACGATTGACTCTGGTGATTATAGGTTTTGCTAAGATTGC 1216
Query 897 GACACG 902
||||||
Sbjct 1217 GACACG 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44507454242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5