BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921841
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27950.1 | Symbols: LTPG1 | glycosylphosphatidylinositol-anc... 983 0.0
> AT1G27950.1 | Symbols: LTPG1 | glycosylphosphatidylinositol-anchored
lipid protein transfer 1 | chr1:9740704-9742159 FORWARD
LENGTH=786
Length=786
Score = 983 bits (532), Expect = 0.0
Identities = 669/731 (92%), Gaps = 26/731 (4%)
Strand=Plus/Plus
Query 1 GTAATTGAACAAAAGAAAGAAAAACTGATAATGAAGGGTCTTCATCTCCACCTCTTCCTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 7 GTAATTGAACAAAAGAAAGAAAAACTGATAATGAAGGGTCTTCATCTCCACCTCGTCCTA 66
Query 61 GTCACCATGACGATCGTTGCCTCCATCGCCACGGCGGCACCTGCTGCTCCAGCGGGTGGA 120
|||||||||||||||||||||||||||||| | || ||||| |||||||| | |||
Sbjct 67 GTCACCATGACGATCGTTGCCTCCATCGCCGCCGCTGCACCGGCTGCTCC--C----GGA 120
Query 121 GGAGCTCTGGCTGACGAATGCAGCCAGGATTTTCAAAAGGTGACTTTGTGTTTGGACTTT 180
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGCTCTGGCTGATGAATGCAACCAGGATTTTCAAAAGGTGACTTTGTGTTTGGACTTT 180
Query 181 GCGACCGGTAAGGCAACGACGCCGTCTAAGAAGTGTTGTGACGCTGTGGAAGATATCAAA 240
|||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCGACCGGGAAGGCAACAATTCCGTCTAAGAAGTGTTGTGACGCTGTTGAAGATATCAAA 240
Query 241 GAAAGAGATCCAAAGTGTTTGTGTTTCGTGATACAACAAGCAAAGACAGGAGGACAAGCC 300
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 241 GAAAGAGATCCAAAGTGTTTGTGTTTCGTTATACAACAAGCGAAGACAGGAGGACAAGCC 300
Query 301 TTGAAGGATCTTGGTGTTCAAGAAGACAAACTCATTCAACTCCCAACAGCTTGTCAGCTC 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TTGAAGGATCTTGGTGTTCAAGAAGACAAACTCATTCAACTCCCAACTTCTTGTCAGCTC 360
Query 361 CACAACGCTAGCATTACCAACTGTCCAAAGCTTCTAGGGCTTTCGCCGAGCTCGCCAGAC 420
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 361 CACAACGCTAGCATTACCAACTGTCCAAAGCTTCTAGGGATTTCACCTAGCTCGCCAGAC 420
Query 421 GCAGCCGTATTCACAAACAATGCCACAACATCAACAACACCGGTGGCACCGGCAGGAAAG 480
|||||||||||||||||||||||||||||| | || | | ||||||||| |||||||||
Sbjct 421 GCAGCCGTATTCACAAACAATGCCACAACA--A-CA-C-C-GGTGGCACCAGCAGGAAAG 474
Query 481 TCTCCGGCAACTCCAGCTACGTCCACGGATAAGGGAGGATCAGCTTCCGCAAAGGATGGT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 TCTCCGGCAACTCCAGCTACGTCCACGGATAAGGGAGGATCAGCTTCAGCAAAGGATGGT 534
Query 541 CACGCCGTT-TTGGCTCTAGCCATCGCTTTGATGACCGTCTCCTTCGTCTCGACCTTGCC 599
||||| || ||| |||||||| ||||||||||| |||||||||| |||| |||||||||
Sbjct 535 CACGCAGTCGTTG-CTCTAGCCGTCGCTTTGATGGCCGTCTCCTTTGTCTTGACCTTGCC 593
Query 600 TAGACATGTGACTTTAGGGATGTAATCTTTTCTAATTTA-T-GAA-G-TGGTTG-GT--- 651
||||||||| || |||||||||||||||||||| || | | | | || || ||
Sbjct 594 TAGACATGTCACATTAGGGATGTAATCTTTTCTTATGAAGTTGGTTGGTGCTTTTGTTTT 653
Query 652 -G-C--TTTTGTTTCAAAACTTATCTTTCAAGTGTGTTTCTTTGTTCGGACATTTGTTGT 707
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGTCCCTTTTGTTTCAAAACTTATCTTTCAAGTGTGTTTCTTTGTTCGGACATTTGTTGT 713
Query 708 AATGAGTCAAC 718
|||||||||||
Sbjct 714 AATGAGTCAAC 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5