BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921847

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36078.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   187    4e-47


> AT1G36078.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 0 Blast hits 
to 0 proteins in 0 species (source: NCBI BLink). | chr1:13481665-13482785 
REVERSE LENGTH=454
Length=454

 Score =  187 bits (101),  Expect = 4e-47
 Identities = 173/204 (85%), Gaps = 20/204 (10%)
 Strand=Plus/Plus

Query  3    ACCTTCGATCGAACCTTCATGCCTCTCTTTCTTATGAAACTCGAATTGAAGATTCGTTCT  62
            |||||||||||| ||| |||||||||||| |||||||||||||||||||||||| | | |
Sbjct  47   ACCTTCGATCGAGCCTACATGCCTCTCTTGCTTATGAAACTCGAATTGAAGATT-G-T-T  103

Query  63   CTTCGTGGTCTCAACAAGCCTAAGTATATTCAATGCGGA-AACGTCGCTC----------  111
            | || |||||||||||||||||||| |||||||||| || ||| ||||||          
Sbjct  104  C-TCATGGTCTCAACAAGCCTAAGTCTATTCAATGC-GACAACATCGCTCTAGAATGTGT  161

Query  112  -T--AGGAAGGAAGATGAAGACTATCGAGTATTTGGCCTGCAAGAGTGTCGACAAGTCGC  168
             |  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct  162  ATAAAGGAAGGAAGAAGAAGACTATCAAGTATTTGGCCTGCAAGAGTGTCGACAAGTCGC  221

Query  169  AGAA-GAGCAAGGGTTTTCATGAG  191
            |||| ||| |||  ||||||||||
Sbjct  222  AGAAAGAGAAAGTTTTTTCATGAG  245



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11259975776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5