BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921865
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28170.1 | Symbols: SOT7 | sulphotransferase 7 | chr1:984133... 1009 0.0
> AT1G28170.1 | Symbols: SOT7 | sulphotransferase 7 | chr1:9841332-9842312
FORWARD LENGTH=981
Length=981
Score = 1009 bits (546), Expect = 0.0
Identities = 849/993 (85%), Gaps = 30/993 (3%)
Strand=Plus/Plus
Query 21 ATGGATGAGAAGGAGATCCCAAAGAACCTGGAGAGAGACGACGAAGAATACGTAAGTTTG 80
|||||||||| ||||||||||||| ||| | || || ||||||||| || ||||||||
Sbjct 1 ATGGATGAGACCAAGATCCCAAAGAAACTGCAAAGCGATGACGAAGAAAACATAAGTTTG 60
Query 81 ATCTCTTCACTT-CCTTCAGATATAGATTTCGTTGGC-CGAGAGCTGTTCAAGTACCAAG 138
|| ||||||||| |||| || ||||||||| || ||| |||| ||||| |||||||
Sbjct 61 ATTTCTTCACTTCCCTT-TGACGTAGATTTCGACAGCACGA-AGCTCTTCAAATACCAAG 118
Query 139 AATCTTGGTACGGCAACAAAATGT-TGCAAGCAATAATCAATTTCCAACGAGGTTTCGAG 197
|| |||||||| | |||||| | |||||| | | ||||||| ||| |||||||||||
Sbjct 119 GATGTTGGTACGACGACAAAA-CTCTGCAAGGAGTCCTCAATTTTCAAAGAGGTTTCGAG 177
Query 198 CCACAAGACACGGACATAATCATTGCTTCGTTCCCCAAAGCCGGCACTACTTGGCTCAAA 257
||||||||||| || ||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 178 CCACAAGACACCGATATAATTATTGCTTCGTTCCCCAAATCTGGCACTACTTGGCTCAAA 237
Query 258 GCTCTCACTGTAGCCCTCCTTGAGAGAT-C---C--AAACACTCTTCTGATGCTCATCCT 311
|||||||| ||||| ||||| ||||||| | | |||||||||||||||| |||||||
Sbjct 238 GCTCTCACGGTAGCTCTCCTCGAGAGATCCAAACAGAAACACTCTTCTGATGATCATCCT 297
Query 312 CTTCGACTTGATAATCCTCAT-AACCTAGTACCATTCTTCGAGCTCGA-TCTGTACGCCA 369
|||| |||||||||||||||| | || ||||||||| |||||||| | |||| | |
Sbjct 298 CTTCTACTTGATAATCCTCATGGA-CTGGTACCATTCCTCGAGCTC-AGGCTGTTCACTG 355
Query 370 AAAGCTCGAAACCAGATATGACCAATTTCTCATCAACCCCGAGGGTATTCGCGACTCATG 429
| | ||||||||||||| |||||| | ||||||| | |||||| |||| |||||||||
Sbjct 356 AGACCTCGAAACCAGATCTGACCAGTATCTCATCGTCGCCGAGGTTATTTTCGACTCATG 415
Query 430 TGCCGCTCCACACGCTGCAAGAAGCTCTCAAGAACTCTTCTTGTAAGATTGTGTACGTGT 489
|| || |||| ||||||| ||| |||||||| |||||| |||||||||| || |||||||
Sbjct 416 TGGCGTTCCAAACGCTGCGAGAGGCTCTCAAAAACTCTCCTTGTAAGATCGTTTACGTGT 475
Query 490 GGAGGAACGTGAAAGATGTTTTGGTGTC-TTATTGGTATTTC-A-AGTCTGCACTGA-TG 545
|||||||||||||||| || ||||||| || |||||||||| | || | ||| | |
Sbjct 476 GGAGGAACGTGAAAGACGTACTGGTGTCGTT-TTGGTATTTCAACAG-C-GCA-AAACTA 531
Query 546 AAGGTAGAAGCA-GAGAGAAGC-TTGTTGGAGTCAATGTTCGAATCGTTTTGCAGAGGAG 603
||| |||||| | ||||||||| || ||||| ||||||||||| || |||||||||||||
Sbjct 532 AAGATAGAAG-AGGAGAGAAGCATT-TTGGATTCAATGTTCGAGTCCTTTTGCAGAGGAG 589
Query 604 TTAGCTATGGCGGACCATTCTGGGAACATGTCTTGAGCTATTGGAGAGGAAGCTTGGAAG 663
||| | || |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 590 TTATCAATTACGGACCATCCTGGGAACATGTCTTGAACTATTGGAGAGCAAGCTTGGAAG 649
Query 664 AATCCCAGAATGTGCTTTTCTTGAAGTACGAGGATTTGAAAACAGAACCTCGTGTGCAGC 723
| ||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 650 ACTCCAAGAATGTGCTTTTCTTGAAGTACGAGGAGTTAAAAACAGAACCTCGCGTGCAGC 709
Query 724 TTAAGAGACTTGCCGAGTTTTTGGATTGTCCTTTTACGGTGGAAGAAGAAGAGAGCGGAT 783
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 710 TGAAGAGACTTGCCGAGTTCTTGGATTGTCCTTTTACGGTGGAAGAAGAAGAGAGGGGAT 769
Query 784 CTGTGGAAGAGATCTTGGAACTTTGTTCATTGCGTAACTTGAAGAATTTGGAGATCAACA 843
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 770 CAGTGGAAGAGATCTTGGACCTTTGCTCATTGCGTAACTTGAAGAATTTGGAGATCAACA 829
Query 844 AAATCGGGATAACG-TCAAGAGGAGTCGATCACAAGAATTTTTTCCGTAAAGGGGAAGTC 902
| | ||| | |||| | | | || | ||||||||||| |||||| |||||||||||||||
Sbjct 830 AGACCGGAAAAACGCTTAGGGGG-GCCGATCACAAGATTTTTTTTCGTAAAGGGGAAGTC 888
Query 903 GGTGACTCGAAGAATTATCTGACTCCTGAAATGGAGAAGAGGATTGACATGATCACCGAG 962
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 889 GGTGACTCGAAGAATCATCTGACTCCTGAAATGGAGAAGATAATTGACATGATCACTGAG 948
Query 963 GATAAATTTGGAGGTTCGGGTTTGAAATTATGA 995
|| ||||||| |||||||| ||||||||| |||
Sbjct 949 GAGAAATTTGAAGGTTCGGATTTGAAATTCTGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5