BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921868
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1179 0.0
> AT1G28190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G12340.1);
Has 166 Blast hits to 162 proteins in 36 species: Archae -
0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses
- 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr1:9846884-9847923
REVERSE LENGTH=1040
Length=1040
Score = 1179 bits (638), Expect = 0.0
Identities = 770/832 (93%), Gaps = 16/832 (2%)
Strand=Plus/Plus
Query 5 AATCCAG-TTATATC-AAATGGGTCACGATAACATCACAAAGTTTGCGAGTCTACTCGTA 62
||||||| ||||| | |||||||||| ||||||||||||||| | | |||||||||||||
Sbjct 92 AATCCAGCTTATA-CTAAATGGGTCATGATAACATCACAAAGCTCGGGAGTCTACTCGTA 150
Query 63 AAGCTACACAGAGCTCCTTCAAGTTGGCTCTGTCTCCATCCCCGACCAGACCGAACCAGC 122
|||||||||| || ||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 151 AAGCTACACAAAGGTCCTTCAAGTTGGCTTTGTCTTCATCCTCGACCAGACCGAACCAGC 210
Query 123 AACGGCGGAAGAATCAAGCTCGTCAGATCCGACGGTTCTTTAGAAGTCTATGATCGCCCC 182
||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 211 AACGGCGGACGAATCAAGCTCGTCAGATCCGACGGTTCTTTACAAGTCTACGATCGTCCC 270
Query 183 GTAGTAGTCTCAGAGCTCACAAGAGACTTCCCAAAACACAAAATCTGTAGATCGGACTTA 242
||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 271 GTAGTAGTCTCAGAGCTAACAAAAGACTTCCCAAAACACAAAATCTGTAGATCAGACTTA 330
Query 243 CTCTACATCGGACAGAAAACCCCTGTTCTGTCTGAAACCGAAACACTTAAGCTAGGTCTC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CTCTACATCGGACAGAAAACCCCTGTTCTGTCTGAAACCGAAACACTTAAGCTAGGTCTC 390
Query 303 AACTACTTCCTCCTTCCATCAGATTTCTTCAAGAACGATCTCTCTTTCCTCACCATCGCC 362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AACTACTTCCTCCTCCCATCAGATTTCTTCAAGAACGATCTCTCTTTCCTCACCATCGCC 450
Query 363 ACCCTAAAAACCCCTCAAAACGGCAGCGTTCTGGTGAAGAAGACTCAACAGCAGCCTCAA 422
||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 451 ACCCTTAAAACCCCACAAAACGGTGGCGTTTTGGTGAAGAAGACTCAACAGCAACCTCAG 510
Query 423 CCATTTCTTATACAAAAGGGAGAAAAAGGAGAGCGTTTAAGGATCCGTGTGTCTGAAGAT 482
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 511 CCGTTTCTTATACAAAAGGGAGAGAAAGGAGAGCGTTTAAGGATCCGTGTGTCTGAAGAG 570
Query 483 TTCGTGTCGGAACTGATGATggaaggaaagaaaaacagagcaaacgaagaggaaga--a- 539
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 571 TTCGTGTCGGAACTGATGATGGAAGGGAAGAAAAACAGAGTAAACGAAGAGGAAGAGGAA 630
Query 540 gaag--g-aggag-a-a-ggagaaggtagagtttgtactacggtgaagttgaagaaagaT 593
|||| | ||||| | | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 631 GAAGAAGGAGGAGGAGAAGGAGAAGGTAGGGTTTGTACTACGGTGAAGTTGAAGAAAGAC 690
Query 594 TATGTTCAACTGGTTGGTTTACGTAAATGGAAGCCAAAGCTTGAGACCATAACAGAGACT 653
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 691 TATGTTCAATTGGTTGGTTTACGTAGATGGAAGCCAAAGCTTGAGACGATAACAGAGACT 750
Query 654 AAGGCGATGAAAGCAGCAACGGTGGagaagacgaagaagaagag-aaagaggtttactgt 712
||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 751 AAGGCAATGAAAGCAGCAACGATGGAGAAGACGAAGAAGAAGAGGAAA-AGGTTTACTGT 809
Query 713 gatgaagaagaagTCTCAGACTGATTCAAGTTCGAAGCGTAAGCTTCAATCCAAATTCAA 772
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 810 GATGAAGAAGAAGTCTCAGAGTGATTCAAGTTCGAAGCGTAAACTTCAATCCAAATCCAA 869
Query 773 GTCCAAAACTAAGAAAACTGCTCTTCG-AAAGATAGATTAATTTTTGTTTTT 823
||||||||||||||||| | | | | ||| |||||||| |||||||||||
Sbjct 870 GTCCAAAACTAAGAAAAGTATTATGAGGAAA-ATAGATTAGTTTTTGTTTTT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5