BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921869
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28200.1 | Symbols: FIP1 | FH interacting protein 1 | chr1:9... 1218 0.0
> AT1G28200.1 | Symbols: FIP1 | FH interacting protein 1 | chr1:9850147-9852366
REVERSE LENGTH=1094
Length=1094
Score = 1218 bits (659), Expect = 0.0
Identities = 759/807 (94%), Gaps = 7/807 (1%)
Strand=Plus/Plus
Query 17 AAATCATGAGTGGGCAAGAGAATCATGA-CGATGGTCGGATCTCTTCTTCTACTCCCGCC 75
|||||||||||||||||||||||||||| | |||| |||| || |||||||| ||||||
Sbjct 62 AAATCATGAGTGGGCAAGAGAATCATGATC-ATGGCCGGA--TC-TCTTCTACGCCCGCC 117
Query 76 GCCGCGTCGGAGCCTTCAAAGGCACCTTCTCACTCCTCTGACTACGCTCCTTACCCTAAG 135
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 118 GCCGCGTCGGAGCCTTCCAAGGCTGCTGCTCACTCCTCTGACTACGCTCCTTACCCTAAG 177
Query 136 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 237
Query 196 ACCACCATGCC-GTCGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 254
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ACCACCATGCCAG-CGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 296
Query 255 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCAGCCGATGCCACCAA 314
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 297 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCTGCCGACGCCACCAA 356
Query 315 GAAGGCAGAGGATCTCGCCGGAAACGTTTGGCAACACTTGAAAACAGGCCCTAGTGTAGC 374
|||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 357 GAAGGCGGAGGATCTCGCCGGAAATTTTTGGCAGCACTTGAAAACAGGCCCAAGTGTAGC 416
Query 375 CGATGCTGCTGTCTCACGAATTGCTCAGGGGACAAAAATACTTGCGGAAGGTGGATATGA 434
||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 417 AGATGCTGCTGTTTCACGAATTGCTCAGGGGACAAAAATACTTGCAGAGGGTGGATACGA 476
Query 435 AAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAGAAACTTCTCAAGACCTATGC 494
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 GAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAAAAACTTCTCAAGACCTATGC 536
Query 495 TTGCTACTTGTCTACATCTGCTGGTCCTGTGATGGGAGTTATGTATCTTTCGACTCACAA 554
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 TTGCTACTTGTCTACATCTGCTGGTCCTGTCCTGGGAGTTATGTATCTTTCGACTCACAA 596
Query 555 GCTTGCCTTCTGTAGTGATACTCCTCTCTCTTACAAAGAGGGTGAGCAGACTCAGTGGAG 614
|||||| |||| |||||| | |||||||||||||||||||||||||||||| | ||||||
Sbjct 597 GCTTGCGTTCTCTAGTGACAATCCTCTCTCTTACAAAGAGGGTGAGCAGACCCTGTGGAG 656
Query 615 CTATTACAAGGTGGTACTTCCAGTGAACCAGCTGAAGGCAGTGAATCCATCAACAAGCAG 674
||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| ||
Sbjct 657 CTATTACAAGGTGGTACTTCCGGCGAATCAGCTGAAGGCAGTGAACCCATCAACAAGTAG 716
Query 675 AGTGAACACATCAGAGAAATACATACAAGTGATTTCCATTGACAACCACGAGTTCTGGTT 734
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 AGTGAACACATCTGATAAATACATACAAGTGATTTCCATCGACAACCACGAGTTCTGGTT 776
Query 735 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCTGTGCAGTCACA 794
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCGGTGCAGTCACA 836
Query 795 TGGTCCATGAGGGTTCACTAGTATAAA 821
|||||| ||| ||| |||| |||||||
Sbjct 837 TGGTCCGTGAAGGTCCACTGGTATAAA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5