BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921870

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01960.1 | Symbols: EDA10 | SEC7-like guanine nucleotide exc...   695    0.0  


> AT1G01960.1 | Symbols: EDA10 | SEC7-like guanine nucleotide exchange 
family protein | chr1:330588-337582 REVERSE LENGTH=5495
Length=5495

 Score =  695 bits (376),  Expect = 0.0
 Identities = 427/451 (95%), Gaps = 5/451 (1%)
 Strand=Plus/Plus

Query  107  ATCGCCC-GAAAATTCTTCTCCCGTTGCCGACTCTGATTCTGGATCCTCCATTCCTGGAC  165
            ||| ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  135  ATC-CCCTGAAAATTCCTCTCCTGTTGCCGACTCTGAATCTGGATCCTCCATTCCTGGAC  193

Query  166  CACTTCACGACGGAGGAGCCGCCGAATATTCTCTCGCCGAACCCGAGATCATCCTCAGCC  225
            |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||
Sbjct  194  CACTTCACGACGGAGGAGCCGCCGAATACTCTCTCGCCGAGTCCGAGATCATCCTCAGCC  253

Query  226  CTCTCATTAACGCCTCCTCCACCGGCGTTCTCAAAATTGTCGATCCGGCCGTTGATTGCA  285
            ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct  254  CTCTCATCAACGCCTCCTCCACCGGCGTTCTCAAGATTGTCGATCCCGCCGTTGATTGCA  313

Query  286  TCCACAAGCTTATTGCTCATGGCTATGTTCGCAGTGAGG---ATCCCACCGGCGGACCTG  342
            |||| |||||||||||||||||||| |||||| ||||||   ||||||||||||||||||
Sbjct  314  TCCAGAAGCTTATTGCTCATGGCTACGTTCGCGGTGAGGCTGATCCCACCGGCGGACCTG  373

Query  343  AGGCGCTACTCCTTTCCAAGCTCATCGAAACCATCTGCAAATGTCACGAGCTAGACGACG  402
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  374  AGGCGCTACTCCTTTCCAAGCTCATTGAAACCATCTGCAAATGTCACGAGCTAGACGACG  433

Query  403  AAGGACTCGAGTTGCTCGTGCTGAAGACGCTCTTAACTGCGGTCACTTCAATTTCCCTGA  462
            |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  434  AAGGGCTCGAGTTGCTCGTGCTGAAGACGCTCTTGACTGCGGTAACTTCAATTTCCCTGA  493

Query  463  GGATCCATGGAGATTCTTTGCTGCAGATCGTCAGGACTTGTTATGGCATCTACTTGGGAA  522
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  494  GGATCCATGGAGATTCTTTGCTACAGATCGTCAGGACTTGTTATGGTATCTACTTGGGAA  553

Query  523  GCAGAAACGTGGTTAACCAGGCGACTGCTAA  553
            |||||||||||||||| ||||||||||||||
Sbjct  554  GCAGAAACGTGGTTAATCAGGCGACTGCTAA  584


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 85/86 (99%), Gaps = 0/86 (0%)
 Strand=Plus/Plus

Query  21   ATGGCTTCTACGGAAGTCGATTCCCGCTTAGGTCGAGTTGTTATCCCAGCTTTGGACAAG  80
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGCTTCTACGGAAGTCGATTCCCGCTTAGGTCGAGTTGTTATCCCTGCTTTGGACAAG  60

Query  81   GTCATTAAGAACGCCTCCTGGCGTAA  106
            ||||||||||||||||||||||||||
Sbjct  61   GTCATTAAGAACGCCTCCTGGCGTAA  86



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5