BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921873
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28230.1 | Symbols: PUP1, ATPUP1 | purine permease 1 | chr1:... 1631 0.0
> AT1G28230.1 | Symbols: PUP1, ATPUP1 | purine permease 1 | chr1:9862073-9864606
REVERSE LENGTH=1250
Length=1250
Score = 1631 bits (883), Expect = 0.0
Identities = 1024/1093 (94%), Gaps = 6/1093 (1%)
Strand=Plus/Plus
Query 3 AGCTAGCAATAAGAAGAAGATGAAGAATGGTCTGATAATCATAAACTGTATAATCCTCAG 62
||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 34 AGCAAGCAGCAAGAAGAAGATGAAGAATGGTTTGATAATCATAAACTGTATTATCCTCAC 93
Query 63 TATAGGAACATGTGGAGGTCCTTTGTTAACTCGTCTCTACTTCACCAATGGCGGAAAACG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 TATAGGAACATGTGGAGGTCCTTTGTTAACTCGTCTCTACTTCACCAATGGCGGAAAACG 153
Query 123 AATCTGGTTCATGAGCTTCCTA-CAAACCGCTGGTTGTCCAATCATCCTCATCCCTCTCT 181
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 154 AATCTGGTTCATGAGCTTCCTATCAA-CCGCTGGTTTTCCAATCATCCTCATCCCTCTCT 212
Query 182 TGGTCTCCTTTCTGAGACGTCGGCGCAGCAACCGCAACAGC-AACAACGCAGAAAACAAG 240
|||||||||| || || ||||| ||||||||||||||| | |||||||| |||||||||
Sbjct 213 TGGTCTCCTTCCTCAGCCGTCGCCGCAGCAACCGCAACC-CTAACAACGCGGAAAACAAG 271
Query 241 GCG-AAAACAAAGCTTTTCCTCATGGAAACTCCTCTGTTCATCGCCTCCATCGTCATCGG 299
|| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 272 -CGGAAAACAAAGCTCTTCCTCATGGAAACTCCTCTGTTTATCGCCTCCATTGTCATAGG 330
Query 300 ATTGCTCACAGGACTTGACAACTACTTATACTCTTACGGATTAGCGTATCTGCCAGTTTC 359
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 331 GTTGCTCACAGGACTTGACAACTACTTATATTCTTACGGATTAGCATATCTGCCAGTTTC 390
Query 360 AACTTCATCTCTCATAATAGGAACTCAACTAGCTTTCAATGCTCTCTTCGCTTTCTTGTT 419
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 391 AACTTCATCGCTCATAATCGGAACTCAACTAGCTTTCAACGCTCTCTTCGCTTTCTTGTT 450
Query 420 GGTCAAGCAAAAGTTCACTCCTTTCTCCATAAACGCCGTCGCTTTGTTGACGGTTGGTAC 479
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 451 AGTCAAGCAAAAGTTCACTCCGTTCTCCATAAACGCCGTCGTTTTGTTGACGGTTGGTAT 510
Query 480 CGGGATCCTTGCTTTACACAGCGATGGAGACAAGCCGGCTAACGAGAGCCATAAACAGTA 539
|||||||||||| |||||||| ||||||||||| |||||||| |||||| | ||| ||||
Sbjct 511 CGGGATCCTTGCGTTACACAGTGATGGAGACAAACCGGCTAAGGAGAGCAAGAAAGAGTA 570
Query 540 TCTGATTGGGTTCTTGATGACTGTGGTTGCAGCTGTTCTCTATGCTTTTATATTGCCGCT 599
| || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 571 TGTGGTTGGGTTCTTGATGACTGTGGTTGCAGCTCTTCTCTATGCTTTTATATTACCGCT 630
Query 600 CGTTGAGCTCACTTACAAGAAAGCTCGACAAGAAATCACTTTCCCACTTGTGCTCGAGAT 659
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 631 CGTTGAGCTAACTTACAAGAAAGCTCGTCAAGAAATCACTTTCCCACTTGTGCTTGAGAT 690
Query 660 TCAGATGGTCATGTGCGTTGCTGCTACTTTGTTCTGTCTCGTTGGGATGTTCATCGTTGG 719
|||||||||||||||| ||||||||||||| |||||| || |||| ||||||||||||||
Sbjct 691 TCAGATGGTCATGTGCCTTGCTGCTACTTTTTTCTGTGTCATTGGCATGTTCATCGTTGG 750
Query 720 AGATTTCAAGGTGATAGAAAAAGAAGCAAGAGAGTTCAAGATTGTAGGATCAGTGTTTTA 779
|||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 751 AGATTTTAAGGTGATAGCAAGAGAAGCAAGAGAGTTCAAGATTGGAGGATCAGTGTTTTA 810
Query 780 CTATGCATTGATAGTGATCACAGGAATAGTATGGCAAGGTTTCTTCTTAGGAGCCATAGG 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 811 CTATGCATTGATAGTGATCACAGGAATAATATGGCAAGGTTTCTTCTTAGGAGCCATAGG 870
Query 840 GATTGTGTTTTGTGCATCATCACTAGCTTCTGGTGTTCTCATCAGTGTTCTGCTTCCGGT 899
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 871 GATTGTGTTTTGTGCATCATCACTAGCTTCTGGTGTTCTGATAAGTGTTCTGCTTCCGGT 930
Query 900 GACTGAAGTTTTGGCCGTCGTTTGTTTCCGGGAGAAGTTTCAGGCAGAGAAAGGTGTCTC 959
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GACTGAAGTTTTCGCCGTCGTTTGTTTCCGGGAGAAGTTTCAGGCAGAGAAAGGTGTCTC 990
Query 960 TCTACTTCTATCTCTCTGGGGCTTCGTCTCTTACTTCTACGGCGAGATTAAATCCGGCAA 1019
||||||||| ||||| ||||| || ||||||||||||||||||||| |||||||||||||
Sbjct 991 TCTACTTCTTTCTCTTTGGGGATTTGTCTCTTACTTCTACGGCGAGTTTAAATCCGGCAA 1050
Query 1020 GAAAGTTCTTGATAAACCTCAGCCGCCGGAGACAGAACTGCCTATTCTTCCAGTTAGTGA 1079
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1051 GAAAGTTGTTGATAAACCTCAACCGCCGGAGACAGAACTGCCTATTCTTCCTGTTAGTGA 1110
Query 1080 TTCTGTTGCTTAA 1092
|| ||||||||||
Sbjct 1111 TTATGTTGCTTAA 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5