BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921875

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28250.1 | Symbols:  | unknown protein; Has 22 Blast hits to...   518    2e-146


> AT1G28250.1 | Symbols:  | unknown protein; Has 22 Blast hits 
to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:9874247-9875579 FORWARD 
LENGTH=762
Length=762

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 322/342 (94%), Gaps = 3/342 (1%)
 Strand=Plus/Plus

Query  8    gaagaagaaggaagatggagaagaaggagaagaaATGTCAGATTTCGTCAACGGAAGCTG  67
            ||||||||| |||||  || |||| ||||||||||| |||||||||||||||||||||||
Sbjct  30   GAAGAAGAA-GAAGA-AGA-AAGATGGAGAAGAAATCTCAGATTTCGTCAACGGAAGCTG  86

Query  68   TTTTTCTTGGAGCTCTAGCTCCAGGCGTCAATGGTCCAACATGGAACACACTGAGATTCG  127
            |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  87   TTTTCCTTGGAGCTCTAGCTCCAGGCGTTAATGGTCCAACATGGAACACATTGAGATTCG  146

Query  128  CGTTTCTACTACTGGGTCTTTGTCTAGCGTTCATGCTCTCTGTAGCTTTCACCAGTGGCC  187
            ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  147  CGTTTCTGCTACTGGGTCTATGTCTAGCTTTCATGCTCTCTGTAGCTTTCACCAGTGGCC  206

Query  188  AATCAATGTTGCTTGTTCATGTTGGCTTTCTCATTGTTATCGCCTCTACTCTCTTTATCC  247
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  207  AATCAATGTTGCTTGTTCATGTTGGCTTTCTCATTGTTATCGCATCTACTCTCTTTATCC  266

Query  248  TCCTCAATTGGTTTCTTGCTCAGACTGGCTTAGTACCAGTGGAGACACAAATGCAGGAGC  307
            ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct  267  TCCTCAATTGGTTTCTTGCTCAGACAGGCTTAGTACAAGTGGAAACACAAATGCAGGAGC  326

Query  308  TGAATTTGGCACCGAGTGATAAAACCAAATGATCATGGACAC  349
            ||||||||  ||||| |||||||||||||||||||||| |||
Sbjct  327  TGAATTTGTTACCGAATGATAAAACCAAATGATCATGGTCAC  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16839695915


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5