BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921879
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28280.1 | Symbols: | VQ motif-containing protein | chr1:98... 1216 0.0
> AT1G28280.1 | Symbols: | VQ motif-containing protein | chr1:9886077-9887478
REVERSE LENGTH=1402
Length=1402
Score = 1216 bits (658), Expect = 0.0
Identities = 748/789 (95%), Gaps = 15/789 (2%)
Strand=Plus/Plus
Query 1 TCTAAAAGCTCTC-T-TC-TACAATGGAGAATTCGCCGAGATACAGAGAAGCGACGAATC 57
||||||||||||| | || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TCTAAAAGCTCTCTTCTCTTACAATGGAGAATTCACCGAGATACAGAGAAGCGACGAATC 120
Query 58 TGATTCCATCGCCGAGATGTCACAACA-C--CAACAGTTGCAGTATGAGCAGTAGCAGTG 114
||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 121 TGATTCCGTCGCCGAGATGTCACAACAGCAACAACAGTTGCGGTATGAGCAGTAGCAGTG 180
Query 115 AAAGTAACAAACCACCAACAACTCCGACCCGACACGTAACCACAAGATCCGAATCCGG-A 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AAAGTAACAAACCACCAACAACTCCGACCCGACACGTAACCACAAGATCCGAATCCGGTA 240
Query 174 AGCCCGTACCCGACAACATTCGTTCAAGCAGATACTTCATCCTTCAAACAAGTCGTTCAG 233
| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 241 A-CCCGTACCCGACAACATTCGTCCAAGCAGATACTTCTTCCTTCAAACAAGTCGTCCAG 299
Query 234 ATGCTAACCGGATCCTCCGAGAGACCCAAACACGGTTCATCTCTTAAACCAAACCCGACC 293
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 ATGCTAACCGGATCCGCCGAGAGACCCAAACACGGTTCATCTCTCAAACCAAACCCGACC 359
Query 294 CATCA--A-CCCGACCCAAGATCCACTCCTTCTTCTTTCTCAATCCCACCAATCAAAGCC 350
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATCATCAACCCGACCCAAGATCCACTCCTTCTTCTTTCTCAATCCCACCAATCAAAGCC 419
Query 351 GTACCAAACAAGAAACAGTCTTCTTCTTCTTCCTCATCAGGGTTTCGTCTCTACGAGCGT 410
||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 420 GTACCTAACAAGAAACAGTCTTCTTCTTCAGC---ATCAGGGTTTCGTCTCTACGAGCGT 476
Query 411 CGTAATTCAATGAAGAATCTCAAAATCAATCCTTTGAACCCGGTTTTTAACCCGGTCAAT 470
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 477 CGTAATTCAATGAAGAATCTCAAAATCAATCCTTTAAACCCGGTTTTTAACCCGGTTAAT 536
Query 471 TCAGCTTTCTCTCCCCGGAAACCGGAGATCCTCTCTCCGAGCATCCTCGATTTCCCATCT 530
||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||
Sbjct 537 TCAGCTTTCTCTCCCCGTAAACCGGAGATCCTCTCTCCAAGCATCTTAGATTTCCCATCT 596
Query 531 CTCGTTCTTAGCCCGGTTACGCCTCTTATACCCGACCCGTTTGATCGATCTGGGTCATCA 590
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 CTCGTTCTCAGCCCGGTTACGCCTCTTATACCCGACCCGTTTGATCGATCCGGGTCATCA 656
Query 591 AATCGAAGCCCCAACGAGCTTGCGGCGGAGGAGAAAGCGATGAAAGAGAGAGGCTTTTAT 650
|| | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 657 AACCAAAGCCCCAACGAGCTTGCTGCGGAGGAGAAAGCAATGAAAGAGAGAGGCTTTTAT 716
Query 651 TTGCATCCATCTCCGGCAACAACTCCGATGGATCCAGAGCCTCGACTTCTTCCACTATTC 710
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 TTGCATCCATCTCCGGCAACAACTCCGATGGATCCAGAGCCTCGACTTCTTCCTCTATTC 776
Query 711 CCGGTGACTTCTCCTCGAGTCTCAGGTTCTTCATCAGCTTCTACTTCTTGaaaaaaaC-C 769
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 777 CCGGTGACTTCTCCTAGAGTCTCAGGTTCTTCATCAGCTTCTACTTCTTGAAAAAAAGAC 836
Query 770 CTAATTTTT 778
|||||||||
Sbjct 837 CTAATTTTT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5