BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921882

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28305.1 | Symbols:  | Plant self-incompatibility protein S1...   699    0.0  


> AT1G28305.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr1:9904734-9905516 REVERSE LENGTH=783
Length=783

 Score =  699 bits (378),  Expect = 0.0
 Identities = 433/459 (94%), Gaps = 6/459 (1%)
 Strand=Plus/Plus

Query  1    TAAACACCTGGGaaaaaaaaaTGAAATATCTATCAGTGTTTCTAtttttttATGGCCTAT  60
            ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  58   TAAACACCTGAAAAAAAAAAATGAAATATCTGTCAGTGTTTCTATTTTTTTATGGCCTAT  117

Query  61   GCATGATTGGTAATGTATATGGTGGACGAGCAAACAAGCTCCATATCTGGAACGAGCTTG  120
            |||| ||||||||||||||   ||||||||||||||||||||||||||||||||| ||||
Sbjct  118  GCATAATTGGTAATGTATA---TGGACGAGCAAACAAGCTCCATATCTGGAACGATCTTG  174

Query  121  ATCCCAATCAAAAGCACTCACACCTCTTTGTGCAGTGTAAATCTGGAAAGGTCGACATGG  180
            |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct  175  ATCCCAATCAGAAGCACTCAGACCTCTTTGTGCAGTGTAAATCTGGAAAGGCCGACATGG  234

Query  181  GAAAACATTATGTCCCGTATGGTAAAATATATCAGTTTGATATTAGGGATAATTTTTGGA  240
            ||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  235  GAAAACATTATGTCAAGTATGGAAAAATATATCAATTTGATATTAGGGATAATTTTTGGA  294

Query  241  AGACGACACTTTTTTGGTGTACCTTTAGACATGGGCCTGGTTACAGGATTGGCCAACAAT  300
            ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct  295  AGACGACACTTTTTTGGTGTACCTTTAGACATGGGCCTGATTATAGGACTGGCCAACAAT  354

Query  301  TTGATGTGTATGAATATAAACCGGGTGTAGCTCAAGGAGGCACATATGAATGGACAGCCA  360
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  355  TTGATGTGTATGAATATAAACCGGGTGTGGCTCAAGGAGGCACATATGAATGGACAGCTA  414

Query  361  GAGAAGATGGAATATATTTTAGGTTAAATCAAGGTACGATCCATAAAGTGCACAACTGGA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct  415  GAGAAGATGGAATATATTTTAGGTTAAATCAAGGTACGATCCATAAAGTTCATAATTGGA  474

Query  421  AGCCAATGCCACCGTAAGAATTGTTATAATCTTGGTATT  459
            |||||||||||||||||||||||||||   |||||||||
Sbjct  475  AGCCAATGCCACCGTAAGAATTGTTAT---CTTGGTATT  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5