BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921894
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28390.2 | Symbols: | Protein kinase superfamily protein | ... 1917 0.0
> AT1G28390.2 | Symbols: | Protein kinase superfamily protein
| chr1:9966186-9968301 REVERSE LENGTH=1680
Length=1680
Score = 1917 bits (1038), Expect = 0.0
Identities = 1276/1386 (92%), Gaps = 35/1386 (3%)
Strand=Plus/Plus
Query 1 tctctctctctaaatctctccaatgggttatctctctTGCAACGGCGAATCCGCCGTTGC 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 54 TCTCTCTCTCTAAATCTCTCCCATGGGTTATCTCTCTTGCAACGGCGAATCCGCCGTCGC 113
Query 61 AATCTGCGATCCTTATAACTGGAATCCTCGTCGAAAATC-AAA--ACCGGAGAAACGTCG 117
|||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 114 AATCTGCGATACTTATAACTGGAATCCTCGTCGACGATCTAAAGTACCGGAGAAACGTCA 173
Query 118 TCCTCCTAAGCTTCGGATTTTCAACTACGACGAACTCGCCGACGCTACAAACGGCTTCTC 177
|||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 174 TCCTCCTAAGCTTCGGGTTTTCAACTACGACGAACTCGCCGTCGCTACTAACGGCTTCTC 233
Query 178 CGCCGGA-AACTTCCTCGGGAAAGGAAGTCACGGCAGAGTTTACAAAGCGGTTCTCGACG 236
|||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 234 CGCC-AATAACTTCCTCGGAAAAGGAAGTCACGGCAGAGTTTACAAAGCAGTTCTCGACG 292
Query 237 ACGGGAAGCTTCTCGCCGCCGTCAAGAGAACAACAATCA-C-C-ACCGCTGGTAATTATA 293
|||| |||||||||||||||||||||||||||||||||| | | |||| ||||||| | |
Sbjct 293 ACGGAAAGCTTCTCGCCGCCGTCAAGAGAACAACAATCACCACTACCGTTGGTAATAACA 352
Query 294 ATAACAACGTGAGTCAAGTAGACAACGAGATCGAGATTCTTTCAAGAGTTCGTCACCGTT 353
|||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||
Sbjct 353 ATAACAACGTGAGTCAGGTAGACAATGAGATCGAGATTCTTTCACGGGTTCGTCACCGTT 412
Query 354 GGATGGTCAACTTAATCGGTTACTGCGTTGACCACCGGAGAAAAACAAAGCTGTTAGTCG 413
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 GGATGGTCAACTTAATCGGTTACTGCGTTGACCACCGGAGGAAAACAAAGCTGTTAGTCG 472
Query 414 TCGACTACATGCCTAACGGTACACTTCACGATCAGTTACATTCTCGTAGTTCGTT--A-- 469
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 473 TCGAGTACATGCCTAACGGTACGCTTCACGATCAGTTACATTCTCGTAGTTCGTTAGATT 532
Query 470 C-CGG-T---TAGTTGGAATCGGAGAATCAAACACGCGCTTCAGATCGCGATTGCTGTCC 524
| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 533 CACGGTTAAGTAGTTGGAATCGGAGAATTAAACACGCGCTTCAGATCGCGATTGCTGTCC 592
Query 525 ACGCTCTTCACACCGCGGAGACTCCGGTGATCCACCGTGACATTAAATCGTGTAACATTC 584
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 593 ACGCTCTTCACACCGCAGAGACTCAAGTGATCCACCGTGACATTAAATCGTGTAACGTTT 652
Query 585 TCATCGACGGTGACGGTAACGCTAGATTAGCAGATTTCGGATTAGCGCTGATCGGAAACG 644
| || |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 653 TAATAGACGGTGACGGTAACGCTAGGTTAGCTGATTTCGGATTAGCATTGATCGGAAACG 712
Query 645 TTGACGATGAGCGTTTGAAATGTACTCCGCCGGCGGGAACGTTGGGGTACTTAGATCCGT 704
||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||
Sbjct 713 TTGACGATGAGCGTTTGAAATATACTCCGCCGGCGGGTACGTTGGGATATTTAGATCCGT 772
Query 705 CGTATTTAGCACCGGCGGATTTGACGGCTAAGAGCGATGTTTTCAGCTTTGGGATATTGT 764
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CGTACTTAGCACCGGCGGACTTGACGGCTAAGAGCGATGTTTTCAGCTTTGGGATATTGT 832
Query 765 TGCTGGAGATTATTAGTGGTAGAGAAGCCATTGATTTGAATTATAGTCCGTCGTGTATTG 824
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 833 TGTTGGAGATTATTAGTGGTAGAGAAGCCATTGATTTGAATTATAGTCCGTCGTGTATCG 892
Query 825 TAGATTGGGCGGTGCCG-TTAATCAAACGCGGCGAATT-CGCCGCGATTTGTGATTTGAA 882
| ||||||||||||||| || ||||||||||||| ||| || ||||||||||||||||||
Sbjct 893 TTGATTGGGCGGTGCCGCTT-ATCAAACGCGGCG-ATTACGACGCGATTTGTGATTTGAA 950
Query 883 GATTAAGAACCGTCCTTATTCCGCCGTGATTCGGAAACTGG-TGATGATGGCGGCGAGGT 941
|||||||||||||||||||| ||||||||||||||| ||| | | |||||||| ||||
Sbjct 951 GATTAAGAACCGTCCTTATTACGCCGTGATTCGGAAGTTGGCCG-TTATGGCGGCTAGGT 1009
Query 942 GTGTGAGATCGACGGCGAAGAAACGTCCAGATATGTTAGAGGTTGTTGAGTGTTTGAAAA 1001
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GTGTTAGATCGACGGCGAAGAAACGTCCAGATATGTTAGAGGTTGTTGAGTGTTTGAAAA 1069
Query 1002 CGGTGAGGGAGTTATCTCAGGCATCTCCGGCGTGGAATAGACTGAGGCGGAGGAGTGAAG 1061
|||||||| ||||||||| | ||||||||||| |||| |||||||||||||||
Sbjct 1070 CGGTGAGGCAGTTATCTC---C------GGCGTGGAATAAACTGCGGCGGAGGAGTGAAG 1120
Query 1062 AGAGATCGGAAAATGTTTTCGCGGTTGAGGAAGAAAAGGAAGAGATTCATGTGAGGATTG 1121
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1121 AGAGATCGGAAAATGTTTTGGCGGTTGAGGAAGAGAAGGAAGAGATTCATGTGAGGATTG 1180
Query 1122 TGAGAGGAGGAAGCAGGAAGAACCGGAAGGTAACGAACGTGACGT-G--TGTGGATGATG 1178
|||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||
Sbjct 1181 TGAGAGGAGGAAGCAGGAAGAATCGGAAGGTATCGAACGTGACGACGAGTGTGGATGATG 1240
Query 1179 TATACGAGAGAATAGTTCCGGAGGAGACGCCGCCGTTTCGTCGTCGGAATTTTGTGCTGA 1238
| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1241 TTTACGAGAGATTAGTTCCGGAGGAAACGCTGCCGTTTCGTCGTCGGAATTTTGTGCTGA 1300
Query 1239 GATCGAGATCAGTGGGAGCGAAAGTTGGACCGGATCCAAACGACGGCTTTGGTGATCAGG 1298
||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 1301 GATCGAGATCAGTAGGAGCGAAAGTTGGACCGGATCCATACGACGGGTTTGGTGATGAGA 1360
Query 1299 TGGTGGTTACAATGAGAATATTTATCGAGAAAGAAAGACCGGTGACGACGGCGGCGATGA 1358
|||||||||||||||| || |||| |||||||||||||||||||||||||| |||||||
Sbjct 1361 CGGTGGTTACAATGAGATTACTTATTGAGAAAGAAAGACCGGTGACGACGGCAGCGATGA 1420
Query 1359 GACTGA 1364
| ||||
Sbjct 1421 GGCTGA 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71033771175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5