BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921902
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28470.1 | Symbols: ANAC010, SND3, NAC010 | NAC domain conta... 1543 0.0
> AT1G28470.1 | Symbols: ANAC010, SND3, NAC010 | NAC domain containing
protein 10 | chr1:10010181-10012198 FORWARD LENGTH=1354
Length=1354
Score = 1543 bits (835), Expect = 0.0
Identities = 944/995 (95%), Gaps = 14/995 (1%)
Strand=Plus/Plus
Query 1 AGAGAGATCAGTAAAATAAGAAGGATGAGTTGGTGTGATGGTTCAGATGATAACTACGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 AGAGAGATCAGTAAAATAAGAAGGATGAGTTGGTGTGATGGTTCAGATGATAACTACGAT 114
Query 61 CTTAATCTTAAAAGAGTATCAAACATTGATCATCCATCGGTTCAACTCAAAGACCAATCT 120
||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 115 CTTAATCTTGAAAGAGTATCGAACACTGATCATCCATCGGTTCAACTCAAAGACCAATCT 174
Query 121 CAATCATGTGTCACGAGCGGTCCAGATTCCAA-ATTTAACGTTGAAACTCCCATCATGAG 179
||||||||||| |||||| ||||||||||||| | ||| || |||||||||||||| ||
Sbjct 175 CAATCATGTGTAACGAGCCGTCCAGATTCCAAGA-TTAGCGCTGAAACTCCCATCACGA- 232
Query 180 TTCTTGTCCTTCTTGTGGACACAAGAT-C--CATCACCAAGACGACCAGGTTGGTGGCAT 236
||||||||||||| ||||||||| | | |||||||||||||||||||||||| ||||
Sbjct 233 --CTTGTCCTTCTTGCGGACACAAGCTCCATCATCACCAAGACGACCAGGTTGGTAGCAT 290
Query 237 CAAAGATTTACCAAGCTTACCGGCAGGAGTCAAATTCGACCCGTCGGATAAAGAGATCCT 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 291 CAAAGATTTACCAAGCTTACCGGCAGGAGTCAAATTCGATCCGTCGGATAAAGAGATCCT 350
Query 297 TATGCATTTAGAGGCGAAGGTATCATCAGATAAGCGAAAACTTCATCCCTTGATCGATGA 356
||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 351 TATGCATTTGGAGGCGAAGGTATCATCCGATAAGCGAAAACTTCATCCGTTGATTGATGA 410
Query 357 ATTTATACCTACGCTTGAAGGAGAGAATGGAATTTGTTATACGCATCCTGAGAAACTTCC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ATTTATACCTACGCTTGAAGGAGAGAATGGAATTTGTTATACGCATCCTGAGAAACTTCC 470
Query 417 TGGAGTAAGCAAAGACGGGCAAGTACGGCACTTCTTCCACCGGCCATCAAAGGCTTATAC 476
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGGAGTAAGCAAGGACGGGCAAGTACGGCACTTCTTCCACCGGCCATCAAAGGCTTATAC 530
Query 477 GACAGGAACACGAAAACGTAGAAAAGTTAGCACAGATGAGGAAGGTCACGAAACAAGGTG 536
||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 531 GACCGGAACACGAAAACGAAGAAAAGTGAGCACAGATGAGGAAGGCCATGAAACAAGGTG 590
Query 537 GCACAAAACGGGCAAGACCCGACCCGTTTTGTCTCAATCAGGAGAAGCCGGTTTCAAGAA 596
||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 591 GCACAAAACAGGCAAGACTCGACCTGTTTTGTCTCAATCAGGAGAAACCGGTTTCAAGAA 650
Query 597 GATCCTAGTGCTCTACACCAACTATGGTCGCCAGAAGAAGCCTGAGAAGACGAATTGGGT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GATCCTAGTGCTCTACACCAACTATGGTCGCCAGAAGAAGCCTGAGAAGACGAATTGGGT 710
Query 657 GATGCATCAGTATCATTTAGGTAGCAGCGAGGACGAAAAAGACGGTGAACCTGTCCTCTC 716
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 711 GATGCATCAGTATCATTTAGGTAGCAGCGAGGACGAAAAAGACGGTGAACCAGTCCTCTC 770
Query 717 GAAAGTCTTCTACCAAACACAGCCTAGGCAATGTGGCGGTTCGATGGAACCTAAACCGAA 776
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 771 TAAAGTCTTCTACCAAACACAGCCTAGGCAATG---CGGTTCGATGGAACCTAAACCGAA 827
Query 777 AAATCTCGTAAACCTAAACCGGTTTAGTTATGATAATATTCAGACGGGTTTTGGGTATGA 836
||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||
Sbjct 828 AAATCTCGTAAACCTAAACCGGTTTAGTTATGAAAATATTCAGGCCGGTTTCGGGTATGA 887
Query 837 ACATGGAGGTAAAAGTGAAGAGCCGACGACGCAGGTGATTCGAGAGTTGGTGGTTCGTGA 896
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 888 GCATGGTGGTAAAAGTGAAGAG---ACGACGCAGGTGATTCGAGAGTTGGTAGTTCGTGA 944
Query 897 AGGCGATGGGTCATGTTCGTTTCTTAGTTTTACTTGTGATGCAAGTAAGGGTAAAGAAAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AGGCGATGGGTCATGTTCGTTTCTTAGTTTTACTTGTGATGCAAGTAAGGGTAAAGAAAG 1004
Query 957 CTTCATGAAGAATCAATAGAACATAATATATTTAA 991
|||||||||||||||||||||||||| |||| |||
Sbjct 1005 CTTCATGAAGAATCAATAGAACATAACATATATAA 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5