BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921905
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28500.1 | Symbols: | Protein of unknown function (DUF626) ... 1210 0.0
AT1G27860.1 | Symbols: | Protein of unknown function (DUF626) ... 584 5e-166
AT1G23950.2 | Symbols: | Protein of unknown function (DUF626) ... 200 2e-50
AT1G23970.2 | Symbols: | Protein of unknown function (DUF626) ... 189 4e-47
> AT1G28500.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:10018691-10020350 FORWARD LENGTH=981
Length=981
Score = 1210 bits (655), Expect = 0.0
Identities = 822/901 (91%), Gaps = 17/901 (2%)
Strand=Plus/Plus
Query 22 ATGACGACGGAGGATTG-TGAGTATTTTACGGCGGAGGAATATTCCCGTCATGTGAGAGA 80
||| |||||||||| || | || |||||||| |||||||||| ||||||||||||| ||
Sbjct 1 ATGTCGACGGAGGA-TGCTCTGTGTTTTACGGGGGAGGAATATGCCCGTCATGTGAGGGA 59
Query 81 ATACTGGCGTGCAGTGGCGGAATCGGATGGTTTTGATAT-CGAGGACATT-GATAGTCCA 138
|||||||||| |||||||||||| |||||||||||| | |||||| ||| || ||||||
Sbjct 60 GTACTGGCGTGGAGTGGCGGAATCCGATGGTTTTGAT-TCCGAGGATATTCGA-AGTCCA 117
Query 139 GTAGTACTTACTGGACTGTTTTC-CTACGACTGTCAATGTGGTTATCGTTATCCTGAGCC 197
||||| |||||||||||| |||| |||||||||||||| |||| |||||||||||| ||
Sbjct 118 GTAGTGCTTACTGGACTG-TTTCACTACGACTGTCAATCTGGTCGTCGTTATCCTGACCC 176
Query 198 TCTCTTGGTCAAGCGATATGCTTTGTTGGGGCTTCATCGTTACAATATTTTGCAGGGGAC 257
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 177 TCTCTTGGTCAAGCGATATGCTTTGTTGGGGCTTCATCGTTTCAATATTTTGCAGGGGAC 236
Query 258 AAGTTTCGAGCTCGCTACCCTACAAAAATTCAACAAGACAATGAACCTTACGTCTTCGTA 317
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 AAGTTTCGAGCTCGATGCCCTACAGAAATTCAACAAGACAATGAACCTTACGTCTTCGTA 296
Query 318 CTACATTACTCTGCTTGC--AC-A---A-GATCCA--CCATTGCAGAAAACCTTTCAGGT 368
|||||||||| ||||||| || | | || | | || ||||||||||||||||||||
Sbjct 297 CTACATTACTTTGCTTGCAAACGAGCCAGGAGCTATTCCTTTGCAGAAAACCTTTCAGGT 356
Query 369 TCGAGTTGATGAACGAGCATATGACAGTTTGGATTTGACAGTCGCTATTGCTAGACCTAA 428
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||
Sbjct 357 TCGAGTTGATGAACGAAAATATGACACTTTGGATTTGACAGTCGCTATTGCTAGGCTTAA 416
Query 429 AAAAGATCAAAATGAAGCGGCGGTGACCACCAAGGAGCCCTTCATACCTCACTTTCATGG 488
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |
Sbjct 417 AAAAGATCAAAATGAAGCGGCGGAGACCACCAAGGAGCCCTTCGTACCTCACTTTTGTTG 476
Query 489 TGGCGCAGTGGCGGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGGTGC 548
| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 477 TAGCGCAGTGTCAGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGATGC 536
Query 549 TTTTCATGATGATAGAAGCCGGTTTTACGCGCTAGAGAAATCAGAGTGGCAAGCCACTGG 608
||| | | ||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 537 TTTGCGTCATGATAGAAACCGATTTTACGAGCTAGAGAAATCAGAGTGGCAAGCCACTGA 596
Query 609 TTGGATTTCTCTATATTTGGAACTTTTGATTTTAGCAAATGATAAAGGGATGTTTGGTAT 668
|||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||| |
Sbjct 597 TTGGATTTCTCTTTATTTGGAACTTTTGATTTTAGCAACTGATAGAGGAATGTTTGGTGT 656
Query 669 AGTGCAGACTGGTCTGCCCCAGGTTCAGATTCTGGAAGTGGTGATTGAAACTAAGGAAGA 728
|| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||
Sbjct 657 AGCGCAGACTGGTCTGCCTCAGGTTCAGATTCTGAAAGTGGTGATTGAAACTGAGGAAGA 716
Query 729 AGATGAGAAGCCCCCGGATAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTT 788
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAATGAGAAGCCCCTGGATAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTT 776
Query 789 TACGGGCTTGGCCAAGTCCCCACGTCTTGTTGAGATTGGTGAGCATGTTGCACGCAAAGC 848
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 777 TACGGGCTTGCCCAAGTCCCCACGTCTTGTTGAGATTGGTGAGCATGTTGAACGCAAAGC 836
Query 849 TATCATTAGAAGAGTTATCGATGATTCAGGATACTTGACTCTTCAGGGTAAGTTTTGGAG 908
||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 837 TATCATTAGAAGAGTCATCGATGATTCAGGATACTTGACTCTCCTTGGTAAGTTTTGGAG 896
Query 909 T 909
|
Sbjct 897 T 897
> AT1G27860.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:9704558-9706238 REVERSE LENGTH=870
Length=870
Score = 584 bits (316), Expect = 5e-166
Identities = 383/415 (92%), Gaps = 6/415 (1%)
Strand=Plus/Plus
Query 495 AGTGGCGGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGGTGCTTTTCA 554
|||| | ||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 375 AGTGTCAGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGAAGATGCTTTGCG 434
Query 555 TGATGATAGAAGCCGGTTTTACGCGCTAGAGAAATCAGAGTGGCAAGCCACTGGTTGGAT 614
| ||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 435 TCATGATAGAAACCGATTTTACGAGCTAGAGATATCAGAGTGGCAAGCCACTGATTGGAT 494
Query 615 TTCTCTATATTTGGAACTTTTGATTTTAGCAAATGATAAAGGGATGTTTGGTATAGTGCA 674
|||||| |||||| |||||||||||||||| | ||||| ||||||| | | | |||||
Sbjct 495 TTCTCTTTATTTGAAACTTTTGATTTTAGCGACTGATAGAGGGATG--T--T-T-GTGCA 548
Query 675 GACTGGTCTGCCCCAGGTTCAGATTCTGGAAGTGGTGATTGAAACTAAGGAAGAAGATGA 734
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 549 GACTGGTCTGCCCCAGGTTCAGATTCTGGAAGTGGTGATTGAAACTGAGGAAGAAAATGA 608
Query 735 GAAGCCCCCGGATAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTTTACGGG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GAAGCCCCCGGATAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTTTACGGG 668
Query 795 CTTGGCCAAGTCCCCACGTCTTGTTGAGATTGGTGAGCATGTTGCACGCAAAGCTATCAT 854
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 669 CTTGCCCAAGTCCCCACGTCTTGTTGAGATTGGTGAGCATGTTGAACGCAAAGCTATCAT 728
Query 855 TAGAAGAGTTATCGATGATTCAGGATACTTGACTCTTCAGGGTAAGTTTTGGAGT 909
||||||||| ||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 729 TAGAAGAGTCATCGATGCTTCAGGATACTTGACTCTCCTTGGTAAGTTTTGGAGT 783
Score = 309 bits (167), Expect = 3e-83
Identities = 185/194 (95%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 252 GGGGACAAGTTTCGAGCTCGCTACCCTACAAAAATTCAACAAGACAATGAACCTTACGTC 311
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 183 GGGGACAAGTTTCGAGCTCGCTGCCCTACTGAAATTCAACAAGACAATGAACCTTACGTC 242
Query 312 TTCGTACTACATTACTCTGCTTGCACAAGATCCACCATTGCAGAAAACCTTTCAGGTTCG 371
|||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||
Sbjct 243 TTCGTACTACATTACTCTTCTTGCACATGATCCATCATTGGAGAAAACCTTTCAGGTTCG 302
Query 372 AGTTGATGAACGAGCATATGACAGTTTGGATTTGACAGTCGCTATTGCTAGACCTAAAAA 431
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGTTGATGAACGAGAATATGGCAGTTTGGATTTGACAGTCGCTATTGCTAGACCTAAAAA 362
Query 432 AGATCAAAATGAAG 445
||||||||||||||
Sbjct 363 AGATCAAAATGAAG 376
> AT1G23950.2 | Symbols: | Protein of unknown function (DUF626)
| chr1:8469550-8471417 REVERSE LENGTH=1348
Length=1348
Score = 200 bits (108), Expect = 2e-50
Identities = 328/428 (77%), Gaps = 39/428 (9%)
Strand=Plus/Plus
Query 151 GGACTGTTTTCCTACGACTGTCAATGTGGTTA-TCGTTATCCTG-AGCCTCTCTTGGTCA 208
|||||| || |||||||||||||| || | | | |||||| | ||| |||||||||
Sbjct 200 GGACTGATTCCCTACGACTGTCAACGT-GCAAGGCATTATCC-GTTTCCTGTCTTGGTCA 257
Query 209 AGCGATATGCTTTGTTGGGGCTTCATCGTTACAATATTTTGCAGGGGACAAGTTTCGAGC 268
| | |||||| ||| |||||||||||||||||||| ||| |||||||||| ||| |||
Sbjct 258 AACTTTATGCTAAGTTTGGGCTTCATCGTTACAATATGTTGAAGGGGACAAGCTTCCAGC 317
Query 269 TCGCTACCCTACA-AAAATTCAACAAGACAATGAACCT-TACGTCTTCGTACTACATTAC 326
||||||||||| | |||||||||| | | ||| || || || || | |||||| ||
Sbjct 318 TCGCTACCCTA-ATGAAATTCAACATGTTACCGAA-CTATATTTCCTCTTTCTACATGAC 375
Query 327 TCTGCTTGCACA--A----GATCCA--------C-CATTGCAGAAAACCTTTCAGGTTCG 371
|||||||||||| | |||||| | ||| |||||||||||||||||||||
Sbjct 376 TCTGCTTGCACATGATCCCGATCCAGCTGCTGGCTCATCGCAGAAAACCTTTCAGGTTCG 435
Query 372 AGTTGATGAACGAGCA-TATGACAGTTTGGATTTGA-CAG-TCGCTATTGCTAGACCTAA 428
||||||||||| | || | || |||||||||| | | | | || | ||||||||||||||
Sbjct 436 AGTTGATGAACAA-CAATTTGGCAGTTTGGATATAAACTGCTC-C-ATTGCTAGACCTAA 492
Query 429 A-A--AAGATCAAAATGAAGCGGCGGTGACCACCAAGGA-GCCCTTCATACCTCACTTTC 484
| | ||| | | | | | | || ||||| || | ||||||||| ||||||||||
Sbjct 493 ACACGAAGGTGACT-T-ACTTGAAG-TGTCCACCGAG-ACGCCCTTCATGCCTCACTTTC 548
Query 485 ATGGTGGCGCAGTGG-CGGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGAT 543
||||||||||| ||| || ||||| ||||| ||| | |||||||||||| | |||||||
Sbjct 549 ATGGTGGCGCACTGGGCG-ATGGTATCTTCAAAGTTGAATTGCCTGATTGTCTCTCAGAT 607
Query 544 GGTGCTTT 551
||||||
Sbjct 608 ACTGCTTT 615
> AT1G23970.2 | Symbols: | Protein of unknown function (DUF626)
| chr1:8482031-8483875 REVERSE LENGTH=1297
Length=1297
Score = 189 bits (102), Expect = 4e-47
Identities = 330/432 (76%), Gaps = 47/432 (11%)
Strand=Plus/Plus
Query 151 GGACTGTTTTCCTACGACTGTCAA-TGTGGTTATCGTTATCCTG-AGCCTCTCTTGGTCA 208
|||||| || |||| |||||||| | | |||| |||||||| | ||| |||||||||
Sbjct 188 GGACTGATTACCTATAACTGTCAACT-TTGTTACCGTTATCC-GTTTCCTGTCTTGGTCA 245
Query 209 AGCGATATGCTTTGTTGGGGCTTCATCGTTACAATATT-TTGC-AGGGGACAAGTTTCGA 266
| | |||||| ||| |||||||||||||||||| || | | |||| ||||| |||||
Sbjct 246 AACTTTATGCTAAGTTTGGGCTTCATCGTTACAAT-TTGAT-CAAGGGAACAAGCTTCGA 303
Query 267 GCTCGCTACCCTACA-AAAATTCAACAAG--ACAATGAACCT-TACGTCTTCGTACTACA 322
||||||| || || | || ||||||| | |||| || || || ||| || | |||||
Sbjct 304 GCTCGCTGCCTTA-ATGAAGTTCAACATGTTACAA--AA-CTATATGTCCTCTTTCTACA 359
Query 323 TTACTCTGCTTGCACA--A----GATCCA-C--C-A--T--T-GCAGAAAACCTTTCAGG 367
| |||||||||||||| | |||||| | | | | | |||||||||||||||||
Sbjct 360 TGACTCTGCTTGCACATGATCCCGATCCAGCTGCTAGCTCATCGCAGAAAACCTTTCAGG 419
Query 368 TTCGAGTTGATGAACGAGC-ATATGACAGTTTGGAT-TTGACAGTCGCTATTGCTAGACC 425
||||||||||||||| | | || || || ||||| | | || | | | |||||||||||
Sbjct 420 TTCGAGTTGATGAAC-AACAATTTGGCACTTTGGGTATAAACTG-CTCCATTGCTAGACC 477
Query 426 TAAA-A--AAGATCAAAATGAAGC-GGCGGTGACCACCAAGGA-GCCCTTCATACCTCAC 480
|||| | ||| | | | | | | ||| ||||||| || ||||||||||||||||
Sbjct 478 TAAACACGAAGGT--GACT-TA-CTTGAAGTGTCCACCAA-GACGCCCTTCATACCTCAC 532
Query 481 TTTCATGGTGGCGCAGTGG-CGGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTC 539
||||||||||||||| ||| || ||||| | ||| ||||| |||||||||||| | |||
Sbjct 533 TTTCATGGTGGCGCATTGGGCG-ATGGTATATTCAAAGGTGAATTGCCTGATTGTCTCTC 591
Query 540 AGATGGTGCTTT 551
||||| ||||||
Sbjct 592 AGATGATGCTTT 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48877825031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5