BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921906

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28510.1 | Symbols:  | Optic atrophy 3 protein (OPA3) | chr1...   889    0.0  


> AT1G28510.1 | Symbols:  | Optic atrophy 3 protein (OPA3) | chr1:10023876-10026295 
FORWARD LENGTH=1032
Length=1032

 Score =  889 bits (481),  Expect = 0.0
 Identities = 521/540 (96%), Gaps = 3/540 (1%)
 Strand=Plus/Plus

Query  20   aaTGGTGTTGCCGTTGATGAAACTGGGCACACTCGCCGTCAAAACCATAAGTAAACCATT  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  160  AATGGTGTTGCCGTTGATGAAACTGGGCACACTCGCCGTCAAAACCATAAGTAAACCATT  219

Query  80   GGCAAGTCAGCTCAAGCACCAAGCTAAGGTTCATCCCAAGTTTCGTCAATCTATCATCAA  139
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  220  GGCTAGTCAGCTCAAGCACCAAGCTAAGGTTCATCCCAAGTTTCGTCAATCTATCATCAA  279

Query  140  CTTCGCTCAGAGAAATCATCGAATCACGACGCAAATGCAAAGACGGATATATGGTCATGC  199
            |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct  280  CTTCGCTCAGAGGAATCATCGAATCACTACGCAAATGCAAAGAAGGATATATGGTCATGC  339

Query  200  CACTGATGTAGAGATTCGTCCCTTAGATGAGGAAAAGGCTGTTCAAGCTGCTGTTGACCT  259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  340  CACTGATGTAGAGATTCGTCCCTTAGATGAGGAAAAGGCTGTTCAAGCTGCTGTTGACCT  399

Query  260  CATTGGAGAGATCTTTCTCTTTGGGGTCGGTGGAGCCGTTGTTGTTTTTGAGGTGCAGAG  319
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  400  CATTGGAGAGATCTTTCTCTTTGGGGTCGGTGGAGCTGTTGTTGTTTTTGAGGTGCAGAG  459

Query  320  GAGTTCACGGTCTGAGGCAAGAAAAGAGGAAGCACGTAAGCAAGAACTAGAGGATTTGAG  379
             ||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  460  AAGTTCGCGGTCAGAAGCAAGAAAAGAGGAAGCACGTAAGCAAGAACTAGAGGAGTTGAG  519

Query  380  AATAAAAGATGAAGAACTAGAAAAGCAAGTGGCGGATCTCAAGAGCAAGCTAGAGGAGCT  439
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  520  AATAAAAGATGAAGAACTAGAAAAGCAAGTGGCAGATCTCAAGAGCAAGCTAGAGGAGCT  579

Query  440  TGAACAACTTGCTAAGGCACGCGGGTTGAGCGGTATTTTCCAGTTAAAACCACAGCCCGG  499
            ||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||
Sbjct  580  TGAACAACTTGCTAAGGCACGAGGACTGAGCGGTATTTTCCAGTTAAAACCACAGCCTGG  639

Query  500  TACTACGGCTAGTGGGAAACCAGACAAATCCAGTTGAATCATCATCA-C--CATCTTATT  556
            |||||| |||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct  640  TACTACCGCTAGTGGGAAACCAGACAAATCCAGTTGAATCATCATCATCATCATCTTATT  699



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26674332057


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5