BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921924
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2444 0.0
> AT1G28690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:10080042-10081604 REVERSE LENGTH=1563
Length=1563
Score = 2444 bits (1323), Expect = 0.0
Identities = 1485/1565 (95%), Gaps = 4/1565 (0%)
Strand=Plus/Plus
Query 22 ATGAAAATCTTCAGATTCACGTCAATCTCACCGCGGATTTTCCCGTTGAATCACTACTCA 81
|||| |||||||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 1 ATGAGAATCTTCAGATTCACGTCAATCTCACCGCGGATTTTGCCGTCGAATCATTACTCA 60
Query 82 ACATTCCCGTTGAAACAAAATGTTTCTTCTCTCTCACCGGCAAAATACATTGCGGGAGCT 141
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACATTCCCGTTGAAACAAAACGTGTCTTCTCTCTCACCGGCGAAATACATTGCGGGAGCT 120
Query 142 TTACAAGAACACATCAATTCTTCGGCTCCAAAAGCTGGGCAGAAGATACACGCCGATATC 201
||||||||||| ||||||||| |||| ||||||||||| ||||||||||||| ||||||
Sbjct 121 TTACAAGAACATATCAATTCTCCGGCCCCAAAAGCTGGTAAGAAGATACACGCAGATATC 180
Query 202 ATCAAAACTGGGTTT-ATACCAGATTTGAACATATCCATCAAACTACTCATTCTACATTT 260
||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 181 ATCAAAACTGGGTTTCA-ACCAGATTTGAATATATCCATCAAACTACTCATTCTTCATTT 239
Query 261 AAAATGCGGCTGCTTGAGTTATGCACGCCAAGTGTTCGACGAATTACCCAAGCCAACATT 320
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAATGCGGTTGCTTGAGTTATGCACGCCAAGTGTTCGACGAATTACCCAAGCCAACATT 299
Query 321 ATCGGCTTACAACTACATGATTAGTGGCTACTTAAAGCATGGATTTTTAAAGGAATTACT 380
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 300 ATCGGCTTACAACTACATGATTAGTGGGTACTTGAAGCATGGATTGGTAAAGGAATTACT 359
Query 381 TCTCCTAGTTCAATGGATATCTTACTCTGGGGAAAAGGCAGATGGGTACACGCTTTCAAT 440
||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TCTTCTAGTTCAACGGATGTCATACTCTGGGGAAAAGGCAGATGGGTACACGCTTTCCAT 419
Query 441 GGTTCTAAAGGCTTCTAATAGTCTTGGTTCGAATATGTTAATGCCGCGTAGCTTATGCAG 500
||||||||||||||||||||||| ||| |||| |||| || |||||||||||||||| ||
Sbjct 420 GGTTCTAAAGGCTTCTAATAGTCGTGGCTCGACTATGATACTGCCGCGTAGCTTATGTAG 479
Query 501 GTTGGTCCATGCCCGGATTATAAAATGTGACGTTGAACTCGATGATGTGTTAATTACGGC 560
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct 480 GTTGGTCCATGCCCGGATTATAAAATGTGATGTTGAGCTAGATGATGTGTTGATTACTGC 539
Query 561 ACTTGTGGATGCTTATGTGAAGAGTGGGAAGCTGGAGTCTGCAAGGACTGTGTTTGAAAC 620
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 ACTTGTTGATACTTATGTGAAGAGTGGGAAGTTGGAGTCTGCAAGGACTGTGTTTGAAAC 599
Query 621 AATGAAAGATGAGAATGTTGTGTGTTGTACATCAATGATTTCAGGTTACATGAATCAAGG 680
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 AATGAAAGATGAGAATGTTGTGTGTTGTACATCAATGATCTCAGGTTACATGAATCAAGG 659
Query 681 TTTTGTGGAGGATGCGGAAGAGATTTTCAATACAACCAAAGTGAAGGATATTGTTGTTTA 740
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 660 TTTTGTAGAGGATGCGGAAGAGATTTTCAATACTACCAAAGTGAAGGATATTGTAGTTTA 719
Query 741 CAATGCTATGGTGGAAGGTTTCAGCAGATCAGCTGAAACAGCTAGGAGATCAGTTGACAT 800
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 720 CAATGCTATGGTGGAAGGTTTCAGCAGATCAGGTGAAACTGCTAAGAGATCAGTTGACAT 779
Query 801 GTATATTTCGATGCAACGAGCCGGTTTCCATCCGAATATTTCAACTTTTGCTAGCGTGAT 860
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 780 GTATATTTCGATGCAACGAGCTGGTTTCCATCCGAATATTTCAACTTTCGCTAGCGTGAT 839
Query 861 TGGAGCGTGTTCGGTTTTGACATGCCATGAAGTTGGTCAGCAAGTGCACGCTCAGATTAT 920
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 840 TGGAGCGTGTTCGGTTTTGACGTCCCATGAAGTTGGTCAGCAAGTGCACGCTCAGATTAT 899
Query 921 GAAGAGTGGAGTTTACACACATATCAAAATGGGGAGCTCTTTGTTAGACATGTATGCCAA 980
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAGAGTGGAGTTTACACGCATATCAAAATGGGGAGCTCTTTGTTAGACATGTATGCCAA 959
Query 981 ATGCGGAGGGATCGATGATGCAAGAAGAGTCTTTGACCAAATGCAAGAGAAAAACGTGTT 1040
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 ATGCGGAGGGATCAATGATGCAAGAAGAGTCTTTGACCAAATGCAAGAGAAAAACGTATT 1019
Query 1041 TTCTTGGACTTCGATGATAGATGGATATGGAAAGAATGGAAACCCTGAGGAAGCACTCGA 1100
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCGTGGACTTCGATGATTGATGGATATGGAAAGAATGGAAACCCTGAGGAAGCACTCGA 1079
Query 1101 ACTCTTCACTAGGATGAAGGAATTCCATATAGAACCCAATTATGTAACCTTTCTTGGAGT 1160
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1080 ACTCTTCACTAGGATGAAGGAATTCCGTATAGAACCCAATTATGTAACCTTTCTTGGTGC 1139
Query 1161 TCTCTCTGCTTGTTCACATTCTGGTTTAGTCGATAAAGGTTATGAGATCTTTGAGAGCAT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCTCTCTGCTTGTTCACATTCTGGTTTAGTCGATAAAGGTTATGAGATCTTTGAGAGCAT 1199
Query 1221 GCGGAGAGATTATTCCATGAAACCAAAGATGGAACACTATGCTTGCATGGTTGATCTCAT 1280
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 GCAGAGAGATTATTCCATGAAACCAAAGATGGAACACTATGCTTGCATAGTTGATCTCAT 1259
Query 1281 GGGACGAGCTGGAGAACTGAATAAAGCTTTCGAATTTGTTAGGGCGATGCCGGAAAGGCA 1340
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 GGGACGAGCTGGAGATTTGAATAAAGCTTTCGAATTTGCTAGGGCGATGCCGGAAAGGCC 1319
Query 1341 TAACTCAGATGTTTGGGCAGCTCTTCTCAGTTCTTGTAATCTGCATGGTAATGTTGACCT 1400
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1320 TGACTCAGATATTTGGGCAGCTCTTCTCAGTTCTTGTAATTTGCATGGTAATGTTGAACT 1379
Query 1401 CGCAAGCATAGCTGCGAGTGAGCTTTTCAAACTGAATGCTGACAAAAGACCTGGAGCTTA 1460
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 CGCAAGCATAGCTGCGAGTGAGCTTTTCAAACTGAATGCTGATAAAAGACCTGGAGCTTA 1439
Query 1461 TTTAGCATTATCGAATGTCTATGCTTCTAATGATAAGTGGGACAATGTGAGCAAGATCCG 1520
|||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1440 TTTAGCTTTATCCAATGTCTACGCTTCTAATGATAAATGGGACAATGTGAGCAAGATCCG 1499
Query 1521 AGAGGTGATGAAA-GTAAGAAGGATATCTAAAAATATCGGTCGTAGTTGGACCAGCGAAG 1579
||| ||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1500 AGAAGTGATGAAAAG-AAGAAGGATATCTAAAACTATTGGTCGTAGTTGGACCAGCGAAG 1558
Query 1580 ATTGA 1584
|||||
Sbjct 1559 ATTGA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79316861100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5