BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921939
Length=457
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain prote... 667 0.0
AT4G14600.1 | Symbols: | Target SNARE coiled-coil domain prote... 619 6e-177
> AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain protein
| chr1:10147693-10149686 FORWARD LENGTH=796
Length=796
Score = 667 bits (361), Expect = 0.0
Identities = 400/418 (96%), Gaps = 6/418 (1%)
Strand=Plus/Plus
Query 45 GCGGTGCGGGTGGTTCTCTATACGGCGGAGCTGATCCTTATAGATCCAGAGAAGGGCTTA 104
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 178 GCGGTGCGGGTGGTTCTCTATACGGCGGAGCTGATCCGTATAGATCTAGAGAAGGGCTAA 237
Query 105 GCACTAGAAATGCTTCAGGTTCAGAGGAAATCCAGCTGAGGATTGATCCGATGCACTCTG 164
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 238 GCACTAGAAATGCTTCAGGTTCAGAGGAAATTCAGCTGAGGATTGATCCTATGCACTCTG 297
Query 165 ACCTTGATGATGAGA-TCATAGGTCTCCATGGCCAAGTCAGGCAATTGAAGAATATTGCT 223
|||| |||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 ACCTGGATGATGAGATTC-TAGGTCTCCATGGCCAAGTCAGGCAATTGAAAAATATTGCT 356
Query 224 CAAGAAATTGGGTCAGAAGCAAAGTCTCAGAGGGACTTCTTAGATGAACTGCAAATGACA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAAGAAATTGGGTCAGAAGCAAAGTCTCAGAGGGACTTCTTAGATGAACTGCAAATGACA 416
Query 284 TTGATCAGAGCGCAAGCTGGGGTGAAGAACAACATAAGGAAACTGAACATGAGCATAATC 343
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 417 TTGATCAGAGCGCAAGCAGGGGTGAAGAACAACATAAGGAAACTGAACCTAAGCATAATC 476
Query 344 CGTAGTGGCAACAACCACATCATGCACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATC 403
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGTAGTGGTAACAACCACATAATGCACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATC 536
Query 404 CTCTACATGTGGTCCAAGATGTTCAAAAGATAGA--GAGA--CTCATGGCATACTTGT 457
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 537 CTCTACATGTGGTCCAAGATGTTCAAAAGATAGATAGAGAGACTCATGGCATACTTGT 594
> AT4G14600.1 | Symbols: | Target SNARE coiled-coil domain protein
| chr4:8376400-8378335 FORWARD LENGTH=833
Length=833
Score = 619 bits (335), Expect = 6e-177
Identities = 403/437 (92%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 8 TTAAATTTCGCGTCGATGTCGTCCAATCCTCACAGAGGCGGTGCGGGTGGTTCTCTATAC 67
||| |||| ||||||||| |||| ||||| |||||| |||||||||||||||| || ||
Sbjct 148 TTAGATTTTGCGTCGATGGCGTCAAATCCACACAGAAGCGGTGCGGGTGGTTCCCTTTAT 207
Query 68 GGCGGAGCTGATCCTTATAGATCCAGAGAAGGGCTTAGCACTAGAAATGCTTCAGGTTCA 127
|||||||| | ||| || ||||| || ||||||||||| |||||||||||| ||||||||
Sbjct 208 GGCGGAGCCGCTCCATACAGATCTAGGGAAGGGCTTAGTACTAGAAATGCTGCAGGTTCA 267
Query 128 GAGGAAATCCAGCTGAGGATTGATCCGATGCACTCTGACCTTGATGATGAGATCATAGGT 187
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 268 GAAGAAATCCAGCTGAGGATTGATCCGATGCACTCTGACCTGGATGATGAGATCACAGGT 327
Query 188 CTCCATGGCCAAGTCAGGCAATTGAAGAATATTGCTCAAGAAATTGGGTCAGAAGCAAAG 247
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 328 CTCCATGGCCAAGTCAGGCAGTTGAAAAATATTGCTCAAGAAATTGGGTCAGAAGCAAAG 387
Query 248 TCTCAGAGGGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCGCAAGCTGGGGTG 307
| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 388 TTTCAGAGAGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCGCAAGCCGGGGTG 447
Query 308 AAGAACAACATAAGGAAACTGAACATGAGCATAATCCGTAGTGGCAACAACCACATCATG 367
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 448 AAGAACAACATAAGGAAACTAAACATGAGCATAATCCGTAGTGGCAACAACCACATCATG 507
Query 368 CACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATCCTCTACATGTGGTCCAAGATGTTC 427
||||| ||||||||||| |||||| |||||||| |||||||||| ||||| |||||||||
Sbjct 508 CACGTGGTTCTTTTCGCTCTCCTCGTCTTCTTTGTCCTCTACATCTGGTCTAAGATGTTC 567
Query 428 AAAAGATAGAGAGACTC 444
|||||||| | ||||||
Sbjct 568 AAAAGATAAAAAGACTC 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21765935317
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5