BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921942
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29090.1 | Symbols: | Cysteine proteinases superfamily prot... 1742 0.0
AT1G29080.1 | Symbols: | Papain family cysteine protease | chr... 750 0.0
AT1G29110.1 | Symbols: | Cysteine proteinases superfamily prot... 230 3e-59
> AT1G29090.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:10162983-10164452 REVERSE LENGTH=1255
Length=1255
Score = 1742 bits (943), Expect = 0.0
Identities = 1037/1084 (96%), Gaps = 0/1084 (0%)
Strand=Plus/Plus
Query 1 GTGTGATTCTTTCATCAATATCAAAATGACATCGATATTATTCATGTTTGTGAGTCTAAC 60
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 70 GTGTGATTCTTTCATCAATAACAAAATGACATCGATATTATTCATGCTCGTGAGTCTAAC 129
Query 61 CATTCTTTCCATGAGTCTAAAAGTCTCTCAAGCCACATCTCGTGTCACCTTCCACGAGCC 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 AATTCTTTCCATGAATCTAAAAGTCTCTCAAGCCACATCTCGTGTCACCTTCCACGAGCC 189
Query 121 AATCGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGTTTATAGCGATGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 190 GATCGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGTTTACAGTGACGA 249
Query 181 GCTCGAGAAACAAATGAGATTTGATGTGTTCAAGAAAAACTTGAAGTTCATTGAGAAATT 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 250 GCTCGAGAAACAAATGAGATTCGATGTGTTCAAGAAAAACTTGAAGTTCATTGAGAAATT 309
Query 241 TAACAAGAAAGGGGATAGAACATACAAGCTTGGTGTCAACGAATTTGCGGATTGGACCAA 300
||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 310 TAATAAGAAAGGGGATAGAACCTACAAGCTTGGTGTCAACGAGTTTGCGGATTGGACCAG 369
Query 301 AGAGGAGTTCATTGCCACCCACACCGGTCTCAAGGGATTTAACGGAATTCCATCCTCGGA 360
|||||| ||||||||||| |||||||| |||||||| ||||||| ||||||||||| ||
Sbjct 370 AGAGGAATTCATTGCCACTCACACCGGCCTCAAGGGGGTTAACGGGATTCCATCCTCTGA 429
Query 361 ATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGATGTCGCCGGCCCTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 430 ATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGATGTCGCTGGCCGTGA 489
Query 421 GATCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAATGTGG 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GACCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAATGTGG 549
Query 481 ATGTTGTTGGGCGTTCTCAAGCGTCGCAGCGGTGGAAGGTTTGACAAAGATTGTTGGAGG 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ATGTTGTTGGGCATTCTCAAGCGTCGCAGCGGTGGAAGGTTTGACAAAGATTGTTGGAAA 609
Query 541 CAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGCGACAGAGAGCGTGACAACGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGCGACAGAGAGCGTGACAACGG 669
Query 601 TTGCAACGGTGGAATAATGTCAGACGCTTTCAGCTATATAATTAAAAACCGAGGCATTGC 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 670 TTGCAACGGTGGAATAATGTCAGACGCTTTCAGCTATATAATCAAAAACCGAGGCATTGC 729
Query 661 CTCAGAAGCATCATACCCTTACCAAGCGACAGAGGGGACATGCCGGTACAATGCAAAACC 720
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 730 CTCAGAGGCATCATACCCTTACCAAGCGGCAGAGGGGACATGCCGGTACAATGGGAAACC 789
Query 721 CTCCGCCTGGATAAGAGGGTTCCAGACCGTTCCAAGCAACAACGAGCGTGCATTGCTCGA 780
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CTCCGCATGGATCAGAGGGTTCCAGACCGTTCCAAGCAACAACGAGCGTGCATTGCTCGA 849
Query 781 GGCTGTATCGAGGCAGCCTGTCTCGGTGTCCATTGACGCGGATGGTCCCGGTTTCATGCA 840
||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 850 GGCTGTATCCAAGCAGCCTGTCTCAGTGTCCATTGACGCGGATGGGCCCGGTTTCATGCA 909
Query 841 TTACTCAGGGGGAGTGTACGATGAGCCGTACTGTGGGACCAACGTGAACCATGCAGTGAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTACTCAGGGGGAGTGTACGATGAGCCGTACTGTGGGACCAACGTGAACCATGCAGTGAC 969
Query 901 ATTCGTTGGATACGGAACGAGTCCGGAAGGGATCAAGTACTGGCTTGCTAAGAACTCTTG 960
|||||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||
Sbjct 970 GTTCGTTGGATACGGAACGAGCCCAGAGGGGATCAAGTACTGGCTGGCTAAGAACTCGTG 1029
Query 961 GGGTGAGACTTGGGGAGAGAATGGTTACATTAGGATCCGTAGAGATGTGGCGTGGCCTCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1030 GGGTGAGACTTGGGGAGAGAATGGTTACATTAGGATCCGTAGAGATGTGGCATGGCCTCA 1089
Query 1021 AGGCATGTGTGGTGTGGCTCAGTATGCTTTTTATCCGGTTGCCTAACTAAATGGCAGATG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1090 AGGCATGTGTGGTGTGGCTCAGTATGCTTTTTATCCGGTTGCCTAACTAAACGGCAGACG 1149
Query 1081 ACTT 1084
||||
Sbjct 1150 ACTT 1153
> AT1G29080.1 | Symbols: | Papain family cysteine protease | chr1:10157494-10158674
REVERSE LENGTH=1041
Length=1041
Score = 750 bits (406), Expect = 0.0
Identities = 837/1039 (81%), Gaps = 54/1039 (5%)
Strand=Plus/Plus
Query 55 TCTAACCAT-TCTTTCCAT-GAGTCTAAAAG-TCTCTCAAGCCACATCTCGTGTCACCTT 111
||||||||| | ||| ||| || ||| |||| ||||| |||| |||||||||||| | ||
Sbjct 30 TCTAACCATAT-TTTTCATGGA-TCT-AAAGATCTCTGAAGCTACATCTCGTGTCGCTTT 86
Query 112 CCACGAGCCA--AT-CGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGT 168
|| ||||| || | ||| ||| |||| ||||||||||||| || || ||||||||
Sbjct 87 GTACAAGCCATCATCCATTGTTGATTACCACCAGCAATGGATGATTCAATTTTCTCGAGT 146
Query 169 TTATAG-CGATGAGCTCGAGAAACAAATGAGATTTGATGTGTTCAAGAAAAACTTGAAGT 227
|||| | |||||| | |||||||| |||| || | ||| ||| | |||| ||||| |
Sbjct 147 TTAT-GACGATGAATTTGAGAAACAGTTGAGGCTTCAAGTGCTCACGGAAAATTTGAAAT 205
Query 228 TCATTGAGAAATTTAACAAGAAAGGGG-AT-AGAA-CATACAAGCTTGGTGTCAACGAAT 284
||||||||| || || || | |||| || | || | ||||| |||||||| ||||| |
Sbjct 206 TCATTGAGAGCTTCAATAA-TATGGGGAATCA-AAGC-TACAAACTTGGTGTTAACGAGT 262
Query 285 TTGCGGATTGGACCAAAGAGGAGTTCATTGCCACCCACACCGGTCTCAAG-GGATTTAAC 343
| | |||||||| |||||||||||| |||||||| ||||||||||| || || ||||
Sbjct 263 TCACAGATTGGACTAAAGAGGAGTTCCTTGCCACCTACACCGGTCTC-AGAGGCGTTAAT 321
Query 344 GGAA-TTCCATCC--TCGGAATTTGTCGATGAAATGATA-CCTTCTTGGAATTGGAATGT 399
| || || || || || ||| | || |||||| || | || |||||||||||| ||
Sbjct 322 GTAACTT-CA-CCATTC-GAAGTGGTTAATGAAACGA-AGCCAGCTTGGAATTGGACCGT 377
Query 400 CAGTGATGTCGC-CGGCCCTGAGATCAAAGATTGGAGATACGAAGGAGCTGTAACACCTG 458
|||||||||| | ||| | || | ||||||||||||| |||||||||| ||||||||||
Sbjct 378 CAGTGATGTC-CTTGGCAC-GA-A-CAAAGATTGGAGAAACGAAGGAGCCGTAACACCTG 433
Query 459 TTAAATACCAAGGCCAATGTGGATGTTGTTGGGCGTTCTCAAGCG-TCGCAGCGGTGGAA 517
| |||| |||||| |||||||| |||||||||| ||||| |||| | ||||||||||||
Sbjct 434 TGAAATCCCAAGGAGAATGTGGAGGTTGTTGGGCATTCTC-AGCGATAGCAGCGGTGGAA 492
Query 518 GGTTTGACAAAGATTGTTGGAGGCAACCT-AGTATCATTGTCTGAACAACAACTTCTAGA 576
||| |||||||||||| | || ||||| | ||||| | || |||||||||||||||||
Sbjct 493 GGTCTGACAAAGATTGCCCGTGGAAACCTCA-TATCACTATCCGAACAACAACTTCTAGA 551
Query 577 TTGCGA-CAGAGAGCGTG-ACAACGGTTGCAACGGTGGAATA-ATGTCAGACGCTTTCAG 633
|||| | |||||||| | |||| |||||||| || |||| | ||| | | |||||||
Sbjct 552 TTGC-ACCAGAGAGC-AGAACAATGGTTGCAAGGGAGGAACATTTGT-AAATGCTTTCAA 608
Query 634 CTATATAATTAAAAACCGAGGCATTGCCTCAG-AAGCATCATACCCTTACCAAGCGACAG 692
||| ||||||||| ||||||||||| | |||| || | |||||||||||||| || ||
Sbjct 609 CTACATAATTAAACACCGAGGCATTTCTTCAGAAAAC-GAATACCCTTACCAAGTGAAAG 667
Query 693 AGGGGACATGCCGGTACAATGCAAAACCCTCC-GCCTGGATAAGAGGGTTCCAGACCGTT 751
|||| ||||||||| ||| || | |||| || || || ||||||||| | | ||||
Sbjct 668 AGGGCCCATGCCGGTCCAACGCTAGACCCGCCATACT-AATCAGAGGGTTCGAAAACGTT 726
Query 752 CCAAGCAACAACGAGCGTGCATTGCTCGAGGCTGTATCGAGGCAGCCTGTCTCGGTGTCC 811
|||||||||||||||||||| || ||||| || || || || || |||||| | ||| ||
Sbjct 727 CCAAGCAACAACGAGCGTGCGTTACTCGAAGCCGTGTCAAGACAACCTGTCGCAGTGGCC 786
Query 812 ATTGACG-C-G-GATGGTCCCGGTTTCATGCATTACTCAGGGGGAGTGTACGATGAGCCG 868
||||| | | | || || |||||||| | |||||||| |||||||||||| ||| || |
Sbjct 787 ATTGATGCCAGTGA-GG--CCGGTTTCGTTCATTACTCTGGGGGAGTGTACAATGCGCGG 843
Query 869 TACTGTGGGACCAACGTGAACCATGCAGTGACATTCGTTGGATACGGAACGAGTCCGGAA 928
|||||||||| | || || ||||||||||| ||||||| ||||| ||||| ||||||
Sbjct 844 AACTGTGGGACTAGTGTAAATCATGCAGTGACGCTCGTTGGCTACGGCACGAGCCCGGAA 903
Query 929 GGGATCAAGTACTGGCTT-GCTAAGAACTCTTGGGGTGAGACTTGGGGAGAGAATGGTTA 987
||||| ||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 904 GGGATGAAGTACTGG-TTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGAATGGTTA 962
Query 988 CATTAGGATCCGTAGAGATGTGGCGTGGCCTCAAGGCATGTGTGGTGTGGCTCAGTATGC 1047
|||||| || ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 963 CATTAGAATTCGTAGAGATGTGGAGTGGCCTCAAGGCATGTGTGGTGTAGCTCAGTATGC 1022
Query 1048 TTTTTATCCGGTTGCCTAA 1066
|| |||||||||||| |||
Sbjct 1023 TTCTTATCCGGTTGCGTAA 1041
> AT1G29110.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:10171683-10173071 FORWARD LENGTH=1005
Length=1005
Score = 230 bits (124), Expect = 3e-59
Identities = 346/447 (77%), Gaps = 40/447 (9%)
Strand=Plus/Plus
Query 45 TGTTTGTGAG-TCTAACCATTCTTTCCAT-GAGTCTAAAAG-TCTCTCAAGCCACATCTC 101
|||| ||| | |||||||||||||||||| || ||| || | |||||||||||| | |||
Sbjct 20 TGTTCGTG-GCTCTAACCATTCTTTCCATGGA-TCT-AAGGATCTCTCAAGCCAGACCTC 76
Query 102 GTGTCACCTTCCACGAGCCAATC-GTTGCTGAACACCATCAGCAATGGATGACTCGGTTC 160
|||||| || ||||| ||||| ||| ||| |||| || ||||||||||||| |||
Sbjct 77 ATGTCACTTTGAACGAG-CAATCAATTGTTGATTACCACCAACAATGGATGACTCAATTC 135
Query 161 TCTCGAGTTTA-TAGCGATG-AGCTCGAGAAACAAATGAGATTTGATGTGTTCAAGAAAA 218
||||||||||| || |||| | | ||||||| ||||||| || | |||||||||||||
Sbjct 136 TCTCGAGTTTACAAG-GATGAATC-CGAGAAAGAAATGAGGCTTAAAGTGTTCAAGAAAA 193
Query 219 ACTTGAAGTTCATTGAGAAATTTAACAAGAAAGGGG-A-TAGAA-C-ATACAAGCTTGGT 274
||||||| ||||||||||| || || || | |||| | | || | |||| | ||||||
Sbjct 194 ACTTGAAATTCATTGAGAACTTCAATAA-TATGGGGAACCA-AAGCTATAC-A-CTTGGT 249
Query 275 GTCAACGAATTTGCGGATTGGACCAA-AGAGGAGTTCATTGCCACCCACACCGGTCTCAA 333
|||||||| || ||||||||| || ||| |||||| |||| ||||||||||| |||
Sbjct 250 GTCAACGAGTTCACGGATTGGA-AAACAGAAGAGTTCCTTGCGACCCACACCGGCCTC-C 307
Query 334 GGGATTTAACGGAA-TTCCATC-CTCGGAA-T-TTGTCGATGAAATGATA-CCTTCTTGG 388
| | |||||| || || || | || ||| | || | || ||| || | || || ||
Sbjct 308 GCG--TTAACGTAACTT-CA-CTATCCGAACTATT-T-AATAAAACGA-AGCCATCAAGG 360
Query 389 AATTGGAATGTCAGTGATGTCG-C-CGG--CCCTGAGATCAAAGATTGGAGATACGAAGG 444
|||||||| | |||||| ||| | || | || | |||||| |||||| |||||||
Sbjct 361 AATTGGAACATGAGTGATATCGACATGGAAGAC-GAAAGCAAAGACTGGAGAGACGAAGG 419
Query 445 AGCTGTAACACCTGTTAAATACCAAGG 471
||||||||||||||||||||| |||||
Sbjct 420 AGCTGTAACACCTGTTAAATATCAAGG 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5