BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921948
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29160.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 760 0.0
AT2G34140.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 335 3e-91
> AT1G29160.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:10183797-10184324 REVERSE LENGTH=528
Length=528
Score = 760 bits (411), Expect = 0.0
Identities = 491/529 (93%), Gaps = 8/529 (2%)
Strand=Plus/Plus
Query 28 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 60
Query 88 AACACCACACAGACAGTTAAAAAA-GAAGAGCAGCAACAACAACA---GCCAGAGCTACA 143
|||| ||||||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 61 AACATCACACAGAC-GATAAAAAAAGAAGAGCAGCAACAACAACAACAGCCAGAGCTACA 119
Query 144 AGCAACAACACCCGTTAGATCATCATCGTCGGATCTGACGGCTGAGAAGCGTCCAGACAA 203
|||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 120 AGCAACAACAGCCGTTAGATCACCCTCATCGGATCTGACGGCTGAGAAGCGTCCAGACAA 179
Query 204 GATCATCCCATGTCCGAGATGCAAGTCCATGGAGACTAAGTTCTGTTACTTCAATAACTA 263
|||||| |||||||||||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct 180 GATCATACCATGTCCGAGATGCAAGAGCATGGAGACTAAGTTTTGTTACTTCAACAACTA 239
Query 264 CAACGTTAATCAACCACGACACTTCTGCAAAGGTTGTCAGCGTTACTGGACCGCCGGTGG 323
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 CAACGTTAATCAACCAAGACACTTCTGCAAAGGTTGTCAACGTTACTGGACCGCCGGTGG 299
Query 324 AGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGAAAGTCCAAACCTCCGGGACGTGT 383
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 300 AGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGGAAGTCAAAACCTCCCGGACGTGT 359
Query 384 CGGTGGGTTTGCCGAGTTGCTTGGAGCTGCGACTGGAGCCGTTGATCAAGTGGAGCTGGA 443
||||||||| || |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 360 CGGTGGGTTCGCTGAGTTGCTTGGAGCTGCGACTGGAGCTGTTGATCAGGTCGAGCTAGA 419
Query 444 CGCTTTGCTAGTGGAAGAGTGGCGAGCCGCCACG---TCACACGGTGGTTTTCGGCATGA 500
||||||||||||||||||||| |||| || ||| || ||||||||||| ||||||||
Sbjct 420 TGCTTTGCTAGTGGAAGAGTGGAGAGCTGCTACGGCGTCTCACGGTGGTTTCCGGCATGA 479
Query 501 TTTTCCGGTGAAGAGACTTCGTTGTTACACCGATGGTCAATCTTGTTAA 549
||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 480 TTTTCCGGTGAAGAGGCTCCGTTGTTACACCGATGGTCAATCTTGTTAA 528
> AT2G34140.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr2:14413758-14414765 REVERSE LENGTH=1008
Length=1008
Score = 335 bits (181), Expect = 3e-91
Identities = 435/550 (79%), Gaps = 47/550 (9%)
Strand=Plus/Plus
Query 23 TTTTAATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCA 82
|||| |||||||| ||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 61 TTTTCATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACTATTGCATTTA 120
Query 83 ACGCCAACACCACACAGACAGTTAAAAAA-GAAGA-GCAGCAACAACAACAGCCAGAGCT 140
|| | | | | ||| | | |||||| ||||| | || | || || | ||| ||||
Sbjct 121 AC---A-CTCGA-ACA-A---T-AAAAAATGAAGAAG-AG-A-CA-CACCCGCCGGAGCA 166
Query 141 ACAAGCAACAACACCCGTTAGATCATCATCGTC---GGATCTGACGGCTGAGAAGCGTCC 197
| |||| |||| | |||||||||||||||| || |||||||||||| |||||||||||
Sbjct 167 AGAAGCCACAATAGCCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCC 226
Query 198 AGACAAGATCATCCCATGTCCGAGATGCAAGTCCATGGAGACTAAGTTCTGTTACTTCAA 257
|| |||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 227 GGATAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAA 286
Query 258 TAACTACAACGTTAATCAACCACGACACTTCTGCAAAGGTTGTCAGCGTTACTGGACCGC 317
||||||||||||||||| || |||||||| || ||||| || || ||||||||||||||
Sbjct 287 CAACTACAACGTTAATCAGCCTCGACACTTTTGTAAAGGCTGCCACCGTTACTGGACCGC 346
Query 318 CGGTGGAGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGAAAGTCCAAACCTCCGGG 377
|||||| || |||||||| ||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 347 CGGTGGTGCACTCCGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCTGG 406
Query 378 ACGTGTCGGTGGGTTTGCCGAGTTGCTTGGAGCTGCGAC-TGGAGCCGTT-GATCAAGTG 435
||||||| ||| || | | | |||||||| || || ||| | || | |||||
Sbjct 407 TCGTGTCG-TGG-TTGGT--A-T-GCTTGGAGATG-GAAATGGTG---TTCGC-CAAGTC 455
Query 436 GAGCTGG-AC--G-CTTTGCTAGTGGAAGAGTGGC-G-A-GCCGCCA-C-GTCA-C--AC 483
||||| | | ||| ||| || || ||||||| | | ||||| | | | || | ||
Sbjct 456 GAGCTTATAAATGGCTT-GCTCGTTGAGGAGTGGCAGCATGCCGC-AGCCG-CAGCTCAC 512
Query 484 GGTGGTTTTCGGCATGATTTTCCGGTGAAGAGACTTCGTTGTTACACCGATGGTCAATCT 543
||| |||| |||||||||||||| ||||| | || || |||||| |||| ||||||||
Sbjct 513 GGTAGTTTCCGGCATGATTTTCCCATGAAGCGGCTCCGGTGTTACTCCGACGGTCAATCG 572
Query 544 TGTTAATTAT 553
|| | |||||
Sbjct 573 TGCTGATTAT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5