BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921949
Length=3104
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29170.1 | Symbols: WAVE2, ATSCAR3, SCAR3 | SCAR family prot... 4748 0.0
> AT1G29170.1 | Symbols: WAVE2, ATSCAR3, SCAR3 | SCAR family protein
| chr1:10190352-10194900 REVERSE LENGTH=3063
Length=3063
Score = 4748 bits (2571), Expect = 0.0
Identities = 2908/3072 (95%), Gaps = 18/3072 (1%)
Strand=Plus/Plus
Query 21 ATGCCACGGAATGTATACGGTATGAACCAAACG-GAGGTTTATAGAAATGTCGATCGTGA 79
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1 ATGCCACGGAATGTATACGGTATGAACCAAA-GCGAGGTGTATAGAAATGTCGATCGTGA 59
Query 80 AGACCCCAAAGCAATTCTCAATGGTGTTGCAGTTACTGGACTTGTTGGGATCTTGCGTCA 139
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 AGACCCTAAAGCAATTCTCAATGGTGTTGCAGTTACTGGACTTGTTGGGGTCTTGCGTCA 119
Query 140 GCTTGGTGATCTCGCTGAGTTTGCAGCAGAGATATTTCATGGGATACAGGAGGAAGTTAT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTTGGTGATCTCGCTGAGTTTGCAGCAGAGATATTTCATGGGATACAGGAGGAAGTTAT 179
Query 200 GGCTACAGCTTCAAGAAGCAATCAATTGAAGATTAGATTGCAGCATATAGAAGCTACAGT 259
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 180 GGCTACAGCTTCAAGAAGCAATCAGTTAAAGATTAGATTGCAGCATATAGAAGCTACAGT 239
Query 260 GCCTCCACTAGAAAAGGCGATGCTTGCACAGACAACTCATATACATTTTGCATACACAGG 319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 GCCTCCACTAGAAAAGGCGATGCTTGCACAAACAACTCATATACATTTTGCATACACAGG 299
Query 320 AGGTCTGGAGTGGCATCCTCGTATCCCAATTATGCAAAATCACTTAATTTACGACGACTT 379
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 300 AGGTCTGGAGTGGCATCCTCGTATCCCAATTACGCAAAATCACTTAATTTATGACGACTT 359
Query 380 GCCTCACATTATCATGGATCCCTATGAAGAGTGCAGGGATCCTCCACGGTTGCACTTGCT 439
|||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 360 GCCTCACATTATTATGGATCCCTATGAAGAATGCAGGGGTCCTCCACGGTTACACTTGCT 419
Query 440 TGATAAATTTGATATAAATGGTCCTGGATCTTGCTTGAAGCGATACTCCGATCCTACTTA 499
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 TGATAAATTTGATATAAATGGTCCTGGATCTTGCTTGAAGCGATACTCAGATCCTACTTA 479
Query 500 TTTCAGAAGAGCATCAAGCAACCTGATTCAAGGAAACACGAAGATCCaaaaagataaaaa 559
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 480 TTTCAGAAGAGCATCAAGCAACCTGAGTCAAGGAAACAAGAAGTTCCAAAAAGATAAAAA 539
Query 560 cctttgtaaaatgaagaagaaaaaaaCTTCGTCAAGGAGTCGAGAGATGTCACGTTTGGC 619
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GCATTGTAAAATGAAGAAGAAAAAAACTTCGTCAAGGAGTCGAGATATGTCACGTTTGGC 599
Query 620 CTCCATGGCTAACCAAAATGCCAGGAAGACATTTACTTCATTTAGCTTCAGTGGACGAAC 679
|||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 600 CTCCTTGGCTAACCAGAATGCCAGGAAGACATTTGCTTCATTTAGCTTCAGTGGACAAAC 659
Query 680 CACTTCTACCAAAACCACCTCAACTAGTGACATGGAAAAAAGATTTGATTTTCAAGATCT 739
| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 660 CTCTTCTACCAAAACCACCTCAACCAGTGACATGGAAAAAAGATATGATTTTCAAGATCA 719
Query 740 TCATTCTCGCTCTTTTGAGTCCAGAAGTGGTTCAGGCTACAACGAATGCCTTTCAACCGC 799
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 720 TCATTCTCGCTCTTTTGAGTCCAGAAGTGGTTCAGGCTACAATGAATGCCTTTCAACTGC 779
Query 800 AACCTCTTCATTGAAGACTGGAGAAAGACCAAAAGGAGTGTTCGTTTCATCCAGCTTGAC 859
||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 780 AACTTCTTCACTGAAGACTGGAGAAAGACCGAAAGGGGTGTTCGTTTCATCCAGCTTGAC 839
Query 860 ACCGGGCTCTTGCACTATCGCTTCAGTCCTTTCTGAATGTGAAACCGAAGATGCTCATGA 919
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACCAGGCTCTTGCACTATTGCTTCAGTCCTTTCTGAATGTGAAACCGAAGATGCTCATGA 899
Query 920 TAATTTCCAGTTTAGTCCTTCTCAAGGGCAAGCTGCTCGTGGCTCTTCTTGCGTTAGTTG 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TAATTTCCAGTTTAGTCCTTCTCAAGGGCAAGCTGCTCGTGGCTCTTCTTGCGTTAGTTG 959
Query 980 GGATGAGAAAGTAGAGATAGTGGAATCTCTTGGTCTGCAGACAGAGGAAGCTTCTGAAAT 1039
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 GGATGAGAAAGCAGAGATAGTGGAATCTCTTGGTCTGCAGACAGATGAAGCTTCTGAAAT 1019
Query 1040 GATGGAGACGAACCCTGTTGTAGATAAACCAGATGAGAAACCAAGCTATGG--A-GGGAC 1096
| ||||| ||||| |||||||||||| | ||||||||||||||||||||| | ||||
Sbjct 1020 GGTGGAGGCGAACTCTGTTGTAGATACTCTAGATGAGAAACCAAGCTATGGGGAAGGGA- 1078
Query 1097 T-GGTGGAGTTGATTTCCATTCTAAGGACATTGAAAATGATAAATCAGAATCAGGACTAC 1155
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 TAGGTGGAGTTGATTTCCATTCTAAGGACAATGAAAATGATAAATCAGAATCAGGACTAC 1138
Query 1156 AAAAACGTACTGGGATTGATGAGGTAAGAG-GAATAAAAACTG-TCCGGGAGATTGTGGG 1213
||||||| ||||||||||||||||||||| || |||||| || || |||||||||||||
Sbjct 1139 GAAAACGTGCTGGGATTGATGAGGTAAGAGAGA-TAAAAAATGGTC-GGGAGATTGTGGG 1196
Query 1214 AGAACCAAGGGATAGTGAACATGAGACTGAAAGCGAAGGGGACTGCTTTGTTGATGCGCT 1273
|||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1197 AGAACCGAGGGATAGTGAACAAGAGACTGAAAGCGAAGGGGAGTGTTTTGTTGATGCGCT 1256
Query 1274 TAATACTATCGAATCAGAATCTGAAAACAAGCAGGGGCATCAAACTAGTCAAGTGAGCAG 1333
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 1257 TAATACTATCGAATCAGAATCTGAAAACAATCAAGGGCTTCAAACTAGTCAAGTGAGCAG 1316
Query 1334 TTCCTGTGGTGTTGCAGATGAGATGTTGGAAAAGTCGGTGTGTGAACAAAAAACAGAGCA 1393
||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||
Sbjct 1317 TTCCTGTGGTGTTGCAGATGAGAGGTTGGAAAAGTCAGTGTGTGAGCAAGAAACAGAGCA 1376
Query 1394 GAATTGCTACAGTGTCGAAGATTCTTGCAGATCAATGGATGGGCTTATAGCCAACGGTTT 1453
||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1377 GAATTCCTACAGTGTCGAAGATTCTTGCAGATCAATGGATGGGCTTATGGCCAACAGTTT 1436
Query 1454 TAAAAATGAAGAGAATGCATCGTCAGCAAATGTAGCTGATGAAATGCATCAACAAAATCC 1513
|||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 1437 TAAAAATGAAGAGAATGCATCGTCAGAAAATGTATCTGTTGAAATGCATCAACAAAATCT 1496
Query 1514 ACAGGTGGGTTCAGATATCTACCGCTTACaaaaaaaTGATCTTTGTGCAAACAAGGATAT 1573
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ACAGGCGGGTTCAGATATCAACCGCTTACAAAAAAATGATCTTTGTGCAAACAAGGATAT 1556
Query 1574 GCGTAACGATTCTGGTGGAAAAGATATCATCACATTTACATATGTGCCAGGTCTCGAGAA 1633
|||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1557 GCGTAATGATTCTGGTGGAAAAGATACCATCACATTTACATTTGTGCCAGGTCTCGAGAA 1616
Query 1634 CAGCTTAGCTGATTCATCAAACCCCTTGATTCATCATGGCCTACAGGAAAATCAAGAACC 1693
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1617 CAGCTTAGTTGATTCATCAAACCCCTTGATTCATCATGGCCTACAGGAAAATCAAGAAAC 1676
Query 1694 AGAAGCTGAATCTTCTGGTGATCTCGAAGCCATTAAAATATGGACTAATGGGGGTCTATT 1753
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1677 AGAAGCTGAATCTTCTGGGGATCTCGAAGCCTTTAAAATATGGACTAATGGTGGTCTATT 1736
Query 1754 GGGACTTAAACCATCGAAACCTCCAGTCTTGGCAGTGCAAAGTTCCTTAAGTCCAGATTG 1813
|||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1737 GGGACTGAAACCATCGAAACCTCCAGTCTTGGCAATGCCAAGTTCTTTAAGTCCAGATTG 1796
Query 1814 CAAGACCGGGGAAAGGACAGTTGGTTTTGCAGAAGCTGAAAAAGATAAATCAGATGATCT 1873
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1797 CAAGACCGAGGAAAGGACAGTTGGTTTTGCAGAAGCTGAAAAAGATAAAGCAGATGATCT 1856
Query 1874 AATTGAAAATGCTTCACATAGACGTGTTCTGAATAATGCAAGCTTAGCAACACCAGGAAC 1933
| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 1857 AGTTGAAAATGCTTCACATAGACATGTTCTGAATAATTCAAGCTTAGCAACGCCAGGAAC 1916
Query 1934 CCAAAATCCAATTAGTTCAAGTGGCATAGCCATGGGTATTGTAGACCAAAGAGAGTCCCA 1993
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1917 CCAAAATCCAGGTAGTTCAAATGGCATAGTCATGGGTATTGTAGACCAAAGAGAGTCCCA 1976
Query 1994 TGAGACTTCTT-TCGGAGTTTTTGGACTCAGCCACAAGTTACTCACTAATGGTTTCCGCA 2052
||||||||||| | |||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 1977 TGAGACTTCTTCT-GGAGTTTTTGGACTCAGCCACAAGTTTCTTACTAGTGGTTTCCGCA 2035
Query 2053 GAAAGGATTCATTTGCCCATGATAGAAAGACTGTACCAGCAACCATTCTAGAGAACGATG 2112
|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2036 GAAAGGATTCATTTGCACATGATAGAAAGACTGTACCAGCAACGATTCCAGAGAACGATG 2095
Query 2113 AAGTGACTACAGAGAGGAGGAGGTTTTGTGACCAAGATATTGATGACAAAACCTTTGTGG 2172
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct 2096 AAGTGACTACAGAGAGGAGGAGGTTTTGTGACCAAGATATTAATGAGAAAACCTTTATGG 2155
Query 2173 ATCCCTTCAGGGATGAAGCTCCCATTGATTGGATTACTTCGTCTCCGCCTCTTCAACACA 2232
| |||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2156 ACCCCTTCAGAGACGAAGCTCCTATTGATTGGATCACTTCGTCTCCGCCTCTTCAACACA 2215
Query 2233 TGAAAATATCTCTCAGTCCCGCTGACACTCTTCAGGCTTCCAGACTGAAGCTTACATTTG 2292
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 2216 TGAAAATATCTCTCAATCCCGCTGACACTCTTCAGGCTTCGAGACTGAAGCTTAAATTTT 2275
Query 2293 CAGATGGGGACAACAGTTACAATACATTTTCTTCCTTCCAGTTGCTTCCAGAGGCTGCAA 2352
||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||| ||| ||
Sbjct 2276 CAGATGGAGACAACACTTACAATACCTTTTCCTCCTTCCAGTTGCTTCCAGAGACTGGAA 2335
Query 2353 CTTCCCTTCCAGATTCGTATTCCGACGACGACGACACTTTTTGTAGATCCTCTCCTTACA 2412
|||||||||| ||||| ||||| ||||||||| || |||||||||||| ||||||||||
Sbjct 2336 CTTCCCTTCCTGATTCTTATTCTGACGACGAC-AC--TTTTTGTAGATCATCTCCTTACA 2392
Query 2413 TGTCAGATACTGATTATCTTAGCGATAATCACTCCTTGTCATATTCTGAGCAGTGGGAAG 2472
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2393 TGTCAGATACCGATTATCTTAGCGATAATCACTCCTTGTCAAATTCTGAGCCGTGGGAAG 2452
Query 2473 AATTCAGTGACAGCCATGGAAGAAAAGAGCAAGAACTATATGATTCATTCCACGAAAGTA 2532
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2453 AATCCAGTGACAGCCATGGAAGAAAAGAGCAAGAACTATATGATTCTTTCCACGAAAGTA 2512
Query 2533 GGCATGTTGATAACAATGCTGAAGCTTCTCCTCTAGGGATCAAATCAGAAAGTGATTGTG 2592
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 2513 GGCATGTTGATAACAATGCTGAAGCTTCCCCTCTAGGGATCAAATCAGAAAGTTCTTGCG 2572
Query 2593 TCGCAGTAAACCTCTCATACCTCCAAAATCCTGCTGAGCCCTTACCACCGCCATTTCCGC 2652
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2573 TCGCCGTAAACCTCTCATATCTCCAAAATCCTGCTGAGCCCTTACCACCGCCATTTCCAC 2632
Query 2653 CCGTGCAATGGATGGTTTCAAAGACACCTTCAGAGAAAATTGAAGACAAAACACAGTCCC 2712
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2633 CCATGCAATGGATGGTTTCAAAGACACCTTCAGAGAAAATGGAAGACAAAACACAGTCCC 2692
Query 2713 TACAACTACAAGACGCTATCAGGTTCGCATTTGAGAAGCATATTTCATTGCCTACAA-TG 2771
||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||| |
Sbjct 2693 TACAACTACAAGAAGCTCTCAGGTTTGCGTTTGAGAAGCATATTTCATTGCCTACAGCT- 2751
Query 2772 AAGAAAGAACTGCCTAGCATGGTGACTCCTGCTCCTAAACCAGAAATTAAGGTCCATCTG 2831
||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2752 AAGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGGCCCATCTG 2811
Query 2832 AAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAGGAGACTGAAACTGGAGAC 2891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2812 AAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAGGAGACTGAAACTGGAGAC 2871
Query 2892 TTCTTGCAACAAATCCGAACACAACAATTCAACCTGAGACCTGTGGTCATGACAACGACA 2951
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2872 TTCTTGCAACAAATCCGAACACAACAATTCAACCTTAGGCCTGTGGTCATGACAACGACA 2931
Query 2952 TCATCGGCTGCTGCAACAACTGACCCTATCATAAACACTAAGATCAGCGCCATTTTGGAG 3011
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2932 TCATCGGCTACTGCAACAACTGACCCTATCATAAACACTAAGATCAGCGCGATTTTGGAG 2991
Query 3012 AAAGCAAACTCAATACGCCAGGCTGTAGCTAGCAAAGATGGAGATGAAAGTGATACATGG 3071
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2992 AAAGCAAACTCAATACGCCAGGCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGG 3051
Query 3072 AGCGATACTTAA 3083
|| ||||| |||
Sbjct 3052 AGTGATACGTAA 3063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154363683611
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5