BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921952
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29195.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 953 0.0
> AT1G29195.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf
senescence stage, petal differentiation and expansion stage;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:10202536-10203396 REVERSE LENGTH=861
Length=861
Score = 953 bits (516), Expect = 0.0
Identities = 582/613 (95%), Gaps = 7/613 (1%)
Strand=Plus/Plus
Query 16 AAAGAGAATGAAGGAGACAATCAGGTGTTGCATAGCTTGCATTCTACCGTGTGGAGCTCT 75
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 136 AAAAAGAATGAAGGAGACAATCAGGTGTTGCATCGCTTGCATTCTACCGTGTGGAGCGCT 195
Query 76 TGACGTAATCAGAATCGTTCACTCAAACGGACACGTGGAGGAGATCAGTGGCACGATCAC 135
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TGACGTGATCAGAATCGTTCACTCAAACGGACACGTGGAGGAGATCAGTGGCACGATCAC 255
Query 136 CGCCAGAGAAATCATGAAGGCTCACCCAAAGCACGTACTCAAGAAACCATCTTCTCCACC 195
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 256 GGCCAGCGAAATCATGAAGGCTCACCCGAAGCACGTACTCAAGAAACCATCTTCTCCAAC 315
Query 196 GTCAGATCACGACGAGCGTGACGTCATCTCAGCCACAAAGATCGTCATCGTCCCTCCCGA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GTCAGATCACGACGAGCGTGACGTCATCTCAGCCACAAAGATCGTCATCGTCCCTCCCGA 375
Query 256 AGCTGAGCTCCAACGTGGCAAGATTTATTTCCTCATGCCTGCAAATAAATCTGATAAATG 315
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 376 AGCTGAGCTCCAACGTGGTAAGATTTATTTCCTCATGCCTGCTACTAAATCTGATAAATG 435
Query 316 CGCCGGCGGAGGAAAGATCCGCCGGGAAAAAGGTAACGCAATAAACGCCGCCGTCAAGAA 375
|||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 436 CGCCGGAGGAGGAAAGATCCGCCGGGAAAAAAGTAACGC---AAACGCCGTCGTCAAGAA 492
Query 376 ACGGTCACAGAATCGCCGGCAAAATCGTGACGGTGATGAGAAATGTAA---CGGCGAAAA 432
|||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 493 ACGGTCACAGTATCGCCGGCAGCATCGTGACGGTGATGAGAAATGTAACGGCGGCGAAAG 552
Query 433 TAATGACGTTAAAGATAAAAACTACGAGAAGGATTTATTGATCTCATCTGATAGATACTT 492
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 553 TAATGACGTTAAAGATAAAAACTACGAGAAGGATTTATTGATCTCGTCTGATCGATACTT 612
Query 493 GACGGAGATACTATCGGAGAAAGTGGCGACGCAAAAAGATCGGAGGAAAGGACGCGTCGG 552
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GACGGAGATATTATCGGAGAAAGTGGCGACGCAAAAAGATCGGAGGAAAGGACGCGTCGG 672
Query 553 CGTTTGGAGGCCGCACTTAGAAAGCATATCGGAGATCATAAGTGAAGATTGAGAAA-CGG 611
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 673 CGTTTGGAGGCCGCACTTAGAAAGCATATCGGAGATCATAACTGAAGACTGAGAAAACGG 732
Query 612 CATCGTTTTTGTG 624
||||||||| |||
Sbjct 733 CATCGTTTTAGTG 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5