BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921956
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29240.1 | Symbols: | Protein of unknown function (DUF688) ... 2455 0.0
> AT1G29240.1 | Symbols: | Protein of unknown function (DUF688)
| chr1:10216779-10219846 REVERSE LENGTH=2294
Length=2294
Score = 2455 bits (1329), Expect = 0.0
Identities = 1630/1772 (92%), Gaps = 33/1772 (2%)
Strand=Plus/Plus
Query 14 CTCTTACTATGGAGGAGAGGAAACTGAACTTCAACGTACCTCTTCTTTCAACAAGACGGA 73
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 309 CTCTTACTATGGAGGAGAGGAAACTGAACTTCAGCGTACCTCTTCTTTCAACAAGACGGA 368
Query 74 TGCAGAAGACAGCAGCAGTCTCTGTGCGTAGAAACAAGAGTAATAACTTTATTGATTATG 133
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 369 TGCAGAAGACAGCAGGAGTCTCTGTGCGTAGAAACAAGAGTAATAACTTCACTGATTATG 428
Query 134 ATTCTAAGACAAGTGAATGTCCTTCTGTTCCAGTTCTTGTTCC--AGA-GATGAGTTTAG 190
| ||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||
Sbjct 429 ACTCTAAGACAAGTGAATGTCCTTCTGTTCCAGTTCTTGTTCCATATATGATGGGTTTAG 488
Query 191 ATGATGAGGTTACTGAACCTGTCTCTGTTCCTTTCACTTGGGAGCAAGCTCCTGGGAGAT 250
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 489 ATGATGAGGTTACTGAACCTGCCTCTGTTCCTTTCACTTGGGAACAAGCTCCTGGAAGAT 548
Query 251 TAAAAGACAATGGTTTCAGACCCCAAGTCTGTGTTTTGACGCAAGAAAAAGAACAAGTCT 310
|||| | ||||| ||||| ||||||||| |||||||||| | ||||| |||||||||| |
Sbjct 549 TAAAGGGCAATGATTTCAAACCCCAAGTTTGTGTTTTGATGAAAGAAGAAGAACAAGTTT 608
Query 311 TTATACCATGTCTTCCACCGGGGAAAGCCGTTGATGGAAACTTGACAAGACTGCAGAGTT 370
||| |||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 609 TTACACCATGTCTTCCACCGGGTAAAGCCGTTGATGCAAACATGACAAGATTGCAGAGTT 668
Query 371 CAAAGGGTAAACAAGTTGAAGAATCAGAGGATGGTGAAGATGATGTGTTTTCTGATGCTC 430
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 669 CAAAGGGTAAACAAGTTGAAGAATCAGATGATGATGAAGATGATGTGTTTTCTGATGCTC 728
Query 431 TTGATACACTCTCTCCAAAGGACTCGTTTTCTTTTAACAACAGTATTAGTGGTGTGAGTG 490
|||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 729 TTGACACTCTCTCTCCAAAGGACTCGTTTTCTTTTAACAATAGCATTAGTGGTGTGAGTG 788
Query 491 AATATGGTGGTGTTGAGACCAAGAAACCACTAGATGCTCAATCTCGGGATTTCATGATGA 550
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 789 AATATGGTGGCGTTGAGACCAAGAAACCACTGGATGCTCAATCTCGGGATTTCATGATGA 848
Query 551 GTCGTTTTTTACCGGCTGCCAAGGCTATGACTGTGGAGCAACCTCATTATGCTTCGAATC 610
||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 849 GTCGTTTTTTACCAGCTGCCAAAGCTATGACTGTGGAGCAGTCTCATTATGCTTCGAATC 908
Query 611 GAAAACCATCCACTTTTATGGCTGAACCAATTATACAGATGAGAGAGTTAGTACCAGGGG 670
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 909 GAAAACCATCCACTTTTATGGCTGAACCAACGATACAGATAAGAGAGTTAGTACCGGGGG 968
Query 671 AGAAGCAGCAAACTCCTAATAGGTATGATGAGTCT-TATT---A-CT-ACCAT--C-A-- 719
|||||||||||||||||||||| ||||||| |||| || | | || || || | |
Sbjct 969 AGAAGCAGCAAACTCCTAATAGATATGATGTGTCTATAGTCCCATCTTACTATTACCACC 1028
Query 720 AA-ACATTGACGATGAAGAAGGCGGGGCGGATGATAAAGATGATGAAGTTTCTGAGTATG 778
|| ||||||| ||||||||| || || || ||| |||||||||||||||||||||| |
Sbjct 1029 AAGACATTGATGATGAAGAAAGCAAGGTGGGTGAGGAAGATGATGAAGTTTCTGAGTACG 1088
Query 779 CCTATCTTTCAAATAAAGGTTGTGGGATGTTGCCACAATTGTGCTTTAAAGACTCTCTTG 838
||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1089 CCTATCTTTCAAAGAGAGGTTGTGGAATGTTGCCACAATTGTGCTTTAAAGACTCTCTCG 1148
Query 839 GCATGCTTAATACTGTGTCTGGTTTTAAAGCCAAACACAACTCTCCAATAACATCCCCAA 898
||||||| || || ||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1149 GCATGCTGAACACAGTGCCTGGTTTTAAAGCTAAACACAACTCTCCAATAACATCACCAA 1208
Query 899 GTCATGATCAAGTGAAGTCAAGCAAGGTTGCTCAACTCAAATATCGATTCCAATCTGTAA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1209 GTCATGATCAAGTGAAGTCAAGCAAGGTTGCTCAACTCAAATATCGATTCCAATCTGTTA 1268
Query 959 AAAAGCTGGCTCTTGATTCAGTTTCTAAGCACAAGTTGAGTGGTAAAGTTCAATCGCCGG 1018
||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1269 AAAAGCTAGCTCTTGATTCAGTTTCTAAGCACAAGTTGAGTGGTAAAGTTCATTCACCAG 1328
Query 1019 TTCATCCAAGCT-TCGGGAACAAGTTCAACTCTGAATCAAACTTGATTTCTGCTGCAAAG 1077
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1329 TTCATCCAAGCAAT-GGGAAGAAGTTCAACTCTGAATCAAACTTGATTTCTGCTGCGAAG 1387
Query 1078 AGGTCTTCATCTCCTTACAGACACACTCACTGTATGTCACCATTTCGCAATACAGGCAAC 1137
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |||
Sbjct 1388 AGGTCTTCATCTCCTTACAGACACTCTCGCTGTATGTCACCATTTCGCAGTACAGGTAAC 1447
Query 1138 AGTTCTCCTTTTCACCCTGCGGGTTTTCCTGAGACTCATAAGGAAGCCGAGAACCTGAGA 1197
|||||||||| |||| ||||||||| |||||||||| || |||| ||||||||||||||
Sbjct 1448 GGTTCTCCTTTACACCATGCGGGTTTCCCTGAGACTCGTAGGGAAACCGAGAACCTGAGA 1507
Query 1198 GCTAACAGGTTGAGTAAGCATACTAGAAACATAAGCAGGACGTCTCAGGAGTTACTCTAC 1257
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GCTAACAGGTTGAGCAATCATACTAGAAACATAAGCAGGACGTCTCAGGAGTTACTCTAC 1567
Query 1258 TCAAAAAGCAATGGTTCAACTAGCGCTCGCTTTGAGAAGACAGTATATGTCGACACCGAG 1317
|||||||||||||||||| | | | | ||||||||||| |||||||||||||||
Sbjct 1568 CCAAAAAGCAATGGTTCAA-T--CT-T-G----GAGAAGACAGTTTATGTCGACACCGAG 1618
Query 1318 AATTTTC-CAATGAGCAATGATCAGCATAACTCAAA-CGTCATGGTCTATCCAGAGGAAG 1375
||| || || ||| ||||||||||||||||||||| | ||||| ||| |||||||||||
Sbjct 1619 AATGATCACA-TGACCAATGATCAGCATAACTCAAATC-TCATGATCTTTCCAGAGGAAG 1676
Query 1376 CAGACATGGCA--A-GGAAACCAGATGCAAATCCTGACCTTGAAGCTTTTGAAAATATAA 1432
|||| ||| || | ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1677 CAGATATGACAGGAAGGAAACCAGATGCCAATCCTGAACTTGAAGCTTTTGAAAATATAA 1736
Query 1433 GTATTAGAAGTGGTGAAATGGTGAAGGAAAATGAGTTAGTAGAGATCAGTAGTGATCTTG 1492
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 1737 GTATTAGAAGTAGTGAAATGGTGAAGGGAAATGAGTTAGTAGAGATCAGTAGTGGTTTTG 1796
Query 1493 ATCGGTCTCTTCTTGCTCCACCGTCGCCCAAAAGGCCTTCTGAATCTTGGCTTTGTCATA 1552
||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1797 ATCGGTCTCCTCTTGCACCACCTTCTCCCAAAAGGCCTTCTGAATCTTGGCTTTGTCATA 1856
Query 1553 ATCTGCCTTTAGTAACTTCTCAGATCCCTTCACGTAGATATCATCCATTCAACCCCCAAA 1612
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1857 ATCTGCCTTCAGTAACTTCTCAGATCACTTCACGTAGATATCATCCATTCAACCCCCAAA 1916
Query 1613 AGCAGCATCTTACAGAAAACTACAGAAATGTTACCAAGTGGGAAACTATTGTTAAGACTT 1672
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1917 AGCAGGATCTTACAGAAAACTACAGAAATGGTACCAAGTGGGAAACTATTGTTAAGACTT 1976
Query 1673 CCTACATGCACAGAGATCATATCCGATATTCCGAAGAACTGGTTGCTCATACATCTCATC 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 CCTACATGCACAGAGATCATATCCGATATTCCGAAGAACTGGTTGCTCATACATCTCATC 2036
Query 1733 AATCCAAAACTTGAGACCTTGAAGCTTCTCGA 1764
|||||||||||||||||||||| |||||||||
Sbjct 2037 AATCCAAAACTTGAGACCTTGATGCTTCTCGA 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5