BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921962

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35760.1 | Symbols:  | Beta-galactosidase related protein | ...   132    3e-30
  AT1G47770.1 | Symbols:  | Beta-galactosidase related protein | ...   108    4e-23


> AT5G35760.1 | Symbols:  | Beta-galactosidase related protein 
| chr5:13934108-13934782 FORWARD LENGTH=534
Length=534

 Score =  132 bits (71),  Expect = 3e-30
 Identities = 116/137 (85%), Gaps = 6/137 (4%)
 Strand=Plus/Plus

Query  88   CCGTGGAGCA-TTTTCTCAAAAGCTCGTTTGCGTTATTCGCGCGAGCCGTCTATGACCAT  146
            ||||||||||  ||| ||||| |||| | ||| || || ||   |||||| |||||||| 
Sbjct  197  CCGTGGAGCACCTTT-TCAAAGGCTCATATGCATTGTTTGCAATAGCCGTTTATGACCA-  254

Query  147  C-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCTAT-GTCCTCAA  204
            | |||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||
Sbjct  255  CACGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCCAAAG-CCTCAA  313

Query  205  AAGATTCTTCAAACCTT  221
             ||||| ||||||||||
Sbjct  314  CAGATTTTTCAAACCTT  330


> AT1G47770.1 | Symbols:  | Beta-galactosidase related protein 
| chr1:17590266-17591261 FORWARD LENGTH=618
Length=618

 Score =  108 bits (58),  Expect = 4e-23
 Identities = 82/93 (88%), Gaps = 4/93 (4%)
 Strand=Plus/Plus

Query  131  AGCCGTCTATGACCATC-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAAT  189
            ||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||
Sbjct  513  AGCCGTCTATGACCA-CACGTTGGTCGAGGATTTCGCGAAGCCCGTCAACATGGTCGAAT  571

Query  190  CCG-CTATGTCCTCAAAAGATTCTTCAAACCTT  221
            ||| | | | | |||| ||||| ||||||||||
Sbjct  572  CCGTCAAGG-CTTCAACAGATTTTTCAAACCTT  603



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5