BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921968
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29320.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2523 0.0
AT1G29330.1 | Symbols: ATERD2, AERD2, ERD2 | ER lumen protein r... 158 2e-37
> AT1G29320.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:10255321-10258343 FORWARD LENGTH=1546
Length=1546
Score = 2523 bits (1366), Expect = 0.0
Identities = 1476/1529 (97%), Gaps = 7/1529 (0%)
Strand=Plus/Plus
Query 6 TACGGCGGCGATATAAAATGCCTCGAGTCATCCCTCCGGAGAATCTCGGTTGCCCACCGA 65
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 18 TACGGCGGCGATAAAAAATGCCTCGAGTCATCCCTCCGGAGAATCTCGGTTGCCCACC-A 76
Query 66 -TCCGTGCTTTAACCTTTGACTCTCTCGGCTTAATCAAAGTGACTGAAGCTCGTGGTAAA 124
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 77 TTCCGTGCTTTAACTTTTGACTCTCTCGGCTTAATAAAAGTGACTGAAGCTCGTGGTCAA 136
Query 125 GAGAGAGGTACTCCGACTGTAGTCAACACATGGGGAGAGATGAATGCATCTAGGACTGTT 184
|||||||| | |||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 137 GAGAGAGGGATTCCGACTGTAGTGAACACATGGGGAGAGATGAATGCATCTAGAAGTGTT 196
Query 185 CTTGCTGCTTCCATTGATGACCGGTTAAGGAATCCGCTTTTGGCCGTTGCAAGAAAAGAT 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 197 CTTGCTGCTTCCATTGATGACCGGTTAAGGAATCCGCTTTTGGCTGTTGCAAGAAAAGAT 256
Query 245 GGCAATGTTGAGGTTCTTAATCCTTGTAATGGTGATCTTCACTTTTCATACTCCGTATTT 304
||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 257 GGCAATGTTGAGGTTATTAACCCTTGTAATGGTGATCTTCACTTCTCATACTCTGTATTT 316
Query 305 GGTGATGATGGTTGTTCCCCTGAGGATAACGAAATTTCTGCCCTGCACTTATTCAGAAAA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 317 GGTGATGATGGTTGTTCCCCTGAGGATAACGAAATTTCTGCCCTGCACTTATTCAGGAAA 376
Query 365 AAGATAGATGATCAGGCAGAAAGATCTTGCACATTGCTTACATGCACGAAAAAGGGAGAT 424
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 377 AAGATAGATGATCAGACAGAAAGATCTTGCACATTGCTTACATGTACGAAAAAGGGAGAT 436
Query 425 GTGAGCCTCAGATCAGTTAAATTTCCAGATGCACATGGTGATTCCACGGATGATGCTTCT 484
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 437 GTGAGTCTCAGATCAGTTAAATTTCCAGATGCACATGGTAATTCCACGGATGATGCTTCT 496
Query 485 CCTAAAACTTGGAAAGCATGTGGTTCTGGTGAAATATTGGTTGGTAAAGTGGATGGGAGC 544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CCTAAAACATGGAAAGCATGTGGTTCTGGTGAAATATTGGTTGGTAAAGTGGATGGGAGC 556
Query 545 GAAAACTTCAGCTTATTTGGAGGGAAACGGGTTGAGGCCAATATATGGGATCTTGAACAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GAAAACTTCAGCTTATTTGGAGGGAAACGGGTTGAGGCCAATATATGGGATCTTGAACAA 616
Query 605 TGTACTAAGATCTGGAGCGCGAAATCCCCTCCTAAGGACAATCTTGGAATCTTCACGCCT 664
||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 617 TGTACAAAGATCTGGAGCGCGAAATGCCCTCCTAAGAACAATCTTGGAATCTTCACGCCT 676
Query 665 ACCTGGTTCACTAGTGCTACGTTCTTGAGCAACGATGATCACCGTAAATTTGTCACGGGA 724
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 677 ACCTGGTTCACTAGTGCTACGTTCTTGAGCAAGGATGATCACCGTAAATTTGTCACAGGA 736
Query 725 ACCAAGTCTCACCAGGTCCGTCTTTATGACATTTCTACTCAACGTAGACCGGTCCTGTCC 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 ACCAAGTCTCACCAGGTCCGTCTTTATGACATTTCTACTCAACGTAGACCGGTCCTGTCC 796
Query 785 TTTGATTTCCGTGAGACCGCCATTACAGCAATCGCGGAAGACCCAGACGGTCATACTATC 844
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 797 TTTGATTTCCGTGAGACCGCTATTACATCAATTGCGGAAGACCCAGACGGTCATACTATC 856
Query 845 TATGTCGGGAATGCTTCTGCTGACCTCGCTTCCTTTGATATACGAACAGGAAAGCTGTTG 904
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 857 TATGTCGGGAATGCTTCTGCTGACCTAGCTTCCTTTGATATACGAACAGGAAAGCTGTTG 916
Query 905 GGAAGCTTTTTAGGAAAATGCTCTGGAAGCATAAGATCTGTGGTTAGACATCCACAGCAT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GGAAGCTTTTTAGGAAAATGCTCTGGAAGCATAAGATCTGTGGTTAGACATCCACAGCAT 976
Query 965 CAAGTGATAGCTTCTTGCGG-CTTGGACCGATATTTACGGGTTTTTGACGTGAAGACACG 1023
|||||||||||||||||||| || ||||||||||||||| |||| |||||| ||||||||
Sbjct 977 CAAGTGATAGCTTCTTGCGGGCT-GGACCGATATTTACGTGTTTATGACGTTAAGACACG 1035
Query 1024 CCATCTCATTTCTGCGGTTTTCTTGAAGCAGCATCTTACAGGTCTTGTATTCGACTCAGG 1083
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1036 CCAGCTCATTTCTGCGGTTTTCTTGAAGCAGCATCTTACAGGTCTTGTATTCGACTCGGG 1095
Query 1084 CTTTTCTGGAGAAGAGACAGCTGAAGCAAACACAGTGGCTGAGGCTGCGACAGAGGAGAA 1143
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1096 CTTTTCTGGAGAAGAGACAGCTGTAGCAAACACAGTGGCTGAGGCTGCCACAGAGGAGAA 1155
Query 1144 GATGACGATCATGGACCAGGAAGATGATGAAACAGAGGAGGCTCCTGTGAAAAGAAAGAA 1203
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1156 GATGACGATCATGGACCAGGAAGATGATGAAACAGAGAAGGCTCCTGTGAAAAGAAAGAA 1215
Query 1204 GTCAAAGAAAGAGAAACGCAGTAGAGAAATAGTCTTTGAGGGTGAAGACGATGAGGAGAA 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GTCAAAGAAAGAGAAACGCAGTAGAGAAATAGTCTTTGAGGGTGAAGACGATGAGGAGAA 1275
Query 1264 TGAAGACGAGTTTGAGAAGGCTCCTGTCAAAACAAAGAAGTCAAAGAAAGAGAAACGCAG 1323
|||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1276 TGAAGACGAGATTGAGAAGGCTCCGGTCAAAACAAAAAAGTCAAAGAAAGAGAAACGCAG 1335
Query 1324 TAGAGAAAAGGTCGTCTCTgaaggtgaagagaaagacgatttaagaagcaagaagacacg 1383
||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1336 TAGAGAAAAAGTC-TCT--GAAGGTGAAGAGAAAGACGAGCTAAGAAGCAAGAAGACACG 1392
Query 1384 agagcacaagaagaagaccaagaaagtgaaacacaatcaagaagaCTAGGTTTAAGTTTT 1443
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1393 AGAGCACAAGAAGAAGACCAAGATAGTGAAACACAATCAAGAAGACTAGGTTTAAGTTTT 1452
Query 1444 GAAGACACATTGTTAACTTCGCTCTGATCTGAGCTACAGTTTTGAACAAAACACTCGCAC 1503
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1453 GAAGACACATTGTTAACTTGGCTCTGATCTGAGCTACAGTTTTGAACTAAACACTCGCAC 1512
Query 1504 AAAAGAAACAGAGTTTGTGTGTTATCTAT 1532
|||||||||||||||||||||||||||||
Sbjct 1513 AAAAGAAACAGAGTTTGTGTGTTATCTAT 1541
Score = 95.3 bits (51), Expect = 2e-18
Identities = 70/78 (90%), Gaps = 5/78 (6%)
Strand=Plus/Plus
Query 1277 GAGAAGGCTCCTGTCAAAACAAAGAAGTCAAAGAAAGAGAAACGCAGTAGAGAAA-AGGT 1335
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1190 GAGAAGGCTCCTGTGAAAAGAAAGAAGTCAAAGAAAGAGAAACGCAGTAGAGAAATAG-T 1248
Query 1336 CGTCTCTgaaggtgaaga 1353
| | | ||| ||||||||
Sbjct 1249 C-T-T-TGAGGGTGAAGA 1263
Score = 93.5 bits (50), Expect = 6e-18
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1178 GAGGAGGCTCCTGTGAAAAGAAAGAAGTCAAAGAAAGAGAAACGCAGTAGAGAAATAGTC 1237
||| ||||||| || |||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1289 GAGAAGGCTCCGGTCAAAACAAAAAAGTCAAAGAAAGAGAAACGCAGTAGAGAAAAAGTC 1348
Query 1238 TTTGAGGGTGAAGA 1251
| ||| ||||||||
Sbjct 1349 TCTGAAGGTGAAGA 1362
> AT1G29330.1 | Symbols: ATERD2, AERD2, ERD2 | ER lumen protein
retaining receptor family protein | chr1:10258248-10261112
REVERSE LENGTH=1186
Length=1186
Score = 158 bits (85), Expect = 2e-37
Identities = 89/91 (98%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 1442 TTGAAGACACATTGTTAACTTCGCTCTGATCTGAGCTACAGTTTTGAACAAAACACTCGC 1501
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1186 TTGAAGACACATTGTTAACTTGGCTCTGATCTGAGCTACAGTTTTGAACTAAACACTCGC 1127
Query 1502 ACAAAAGAAACAGAGTTTGTGTGTTATCTAT 1532
|||||||||||||||||||||||||||||||
Sbjct 1126 ACAAAAGAAACAGAGTTTGTGTGTTATCTAT 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5