BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921978
Length=338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein fa... 385 2e-106
AT5G27771.1 | Symbols: | pseudogene of auxin-responsive family... 263 8e-70
AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive prot... 263 8e-70
AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein fa... 237 5e-62
AT1G29440.1 | Symbols: | SAUR-like auxin-responsive protein fa... 235 2e-61
> AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10321210-10321864 FORWARD LENGTH=655
Length=655
Score = 385 bits (208), Expect = 2e-106
Identities = 300/341 (88%), Gaps = 19/341 (6%)
Strand=Plus/Plus
Query 4 tttttGCTTTCCTAGAGAATAATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGGAA 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TTTTTGCTTTCCCAGAGAATAATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGAAA 119
Query 64 TGGCAACAGAGAGCAGCTCTCCACAGGAAAAGAATCTCATTTCAGAAGTC-AAGTGCTAC 122
||||||||||||||||||||||||||||||||||||||||| || ||| | |||| ||
Sbjct 120 TGGCAACAGAGAGCAGCTCTCCACAGGAAAAGAATCTCATTCCA-AAGACCAAGT---AC 175
Query 123 CAGCAGCTTAAC-AGCTGTAGAGAAGGGATGCTTTGTAGTTTACACGGCGGATAACACAC 181
| | ||| ||| | |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 176 C--C-GCTCAACCA-CTGTAGAGAAGGGATGCTTTGTCGTTTACACGGCGGACAACACAC 231
Query 182 GCTTTGCTTTTCCTATAAG-TAACTTGAGCAACTCTGTTTTTCAAGAGCTCT---A--T- 234
||||||||||||| ||||| || || ||||||||||| ||||||||| | | | |
Sbjct 232 GCTTTGCTTTTCCGATAAGCTACCTA-AGCAACTCTGTATTTCAAGAGATTTTGGAGATA 290
Query 235 -CTGAAGAAGAGTTTGGCCTCCCAACCGGTGGACCAATTACATTGCCGTTCGAATCAGCT 293
||||||||||||||||||||||||||||||||||||| ||||| || ||||| || | |
Sbjct 291 TCTGAAGAAGAGTTTGGCCTCCCAACCGGTGGACCAATCACATTACCATTCGATTCGGTT 350
Query 294 TTCTTGGAGTATCTCATCAAATTGATCGAAAGAAGAATGGA 334
|| |||||||||||||||||||||||| ||||| |||||||
Sbjct 351 TTTTTGGAGTATCTCATCAAATTGATCAAAAGACGAATGGA 391
> AT5G27771.1 | Symbols: | pseudogene of auxin-responsive family
protein | chr5:9837595-9837944 REVERSE LENGTH=350
Length=350
Score = 263 bits (142), Expect = 8e-70
Identities = 259/312 (83%), Gaps = 22/312 (7%)
Strand=Plus/Plus
Query 25 ATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGGAATGGCAACAGAGAGCAGCTCTC 84
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGATGAACACAAAGATGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGCTCTT 60
Query 85 CACAGGAAAAGAATCTCATTTCAGAAGTCAAGTGCTACCAGCAGCTTAACAGCTGTAGAG 144
|||||||||||||||||||| || ||| | | | | || | | | || ||||||||
Sbjct 61 CACAGGAAAAGAATCTCATTCCA-AAG---A-T-C-A--AGTA-C-T-ACTCCTGTAGAG 108
Query 145 AAGGGATGCTTTGTAGTTTACACGGCGGATAACACACGCTTTGCTTTTCCTATAAG-TAA 203
||||| || ||||| |||||||||||||||||||||||||||| |||| | | ||| | |
Sbjct 109 AAGGGTTGTTTTGTGGTTTACACGGCGGATAACACACGCTTTG-TTTTGCAACAAGCT-A 166
Query 204 CTTGAGCAACTCTGTTTTTCAAGAGCTCTATCTGAAGAAGAGTTTGGCCTCCCAACCGGT 263
| ||||||| | | || |||| || |||||||||| ||| ||||||||||||||
Sbjct 167 CCTGAGCAA-AGAGCTCTTGAAGA----TAGCTGAAGAAGACTTTCGCCTCCCAACCGGT 221
Query 264 GGACCAATTACATTGCCGTTCGAATCAGCTTTCTTGGAGTATCTCATCAAATTGAT-CGA 322
|||||||||||||| ||||| || ||||||||||| ||||| || ||||||||| | | |
Sbjct 222 GGACCAATTACATTACCGTTTGATTCAGCTTTCTTAGAGTACCTAATCAAATTGGTAC-A 280
Query 323 AAGAAGAATGGA 334
|||| |||||||
Sbjct 281 AAGACGAATGGA 292
> AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive protein
family | chr1:10322574-10323189 FORWARD LENGTH=616
Length=616
Score = 263 bits (142), Expect = 8e-70
Identities = 278/339 (82%), Gaps = 27/339 (8%)
Strand=Plus/Plus
Query 14 CCTAGAGAATAATGATGAACACAAAGAAGCTAATCAAGAT-GTTCAGGGAATGGCAACAG 72
||| || ||| ||||| ||| |||||||||| || ||||| | | | | ||||||||||
Sbjct 103 CCT-GAAAATGATGATAAACGCAAAGAAGCTTATGAAGATGGCT-AAGAAATGGCAACAA 160
Query 73 AGAGCAGCTCTCCACAGGAAAAGAATCTCATTTCAGA-AGTCAAGTG-CT--ACCAGCAG 128
|||||||| |||||||||||||||||||||||||||| | |||| || || || |||||
Sbjct 161 AGAGCAGCCCTCCACAGGAAAAGAATCTCATTTCAGAGA-TCAAATGTCTTTACTAGCAG 219
Query 129 CT-TAAC-AGCTGTAGAGAAGGGATGCTTT-GTAGTTTACACGGCGGATAACA-CACGCT 184
|| | | | ||||||| ||||| || ||| || || |||||||||||||| | | ||||
Sbjct 220 CTCTT-CTA-CTGTAGAAAAGGGTTG-TTTCGTGGTCTACACGGCGGATAAAATC-CGCT 275
Query 185 TTGCTTTTCCTATAAGTAA-CTTGAGCAACTCTGTTTTTCAAGAGCTCT--A---T--CT 236
|||||||||| |||||| | || |||||||||| || | |||||||||| | | ||
Sbjct 276 TTGCTTTTCCAATAAGTTATCT-GAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCT 334
Query 237 GAAGAAGAGTTTGGCCTCCCAACCGGT-GGACCAATTACATTGCCGTTCGAATCAGCTTT 295
||||||||||| || |||||||| || |||||||| |||||||||||||| || | |||
Sbjct 335 GAAGAAGAGTTCGGTCTCCCAAC-GGAAGGACCAATCACATTGCCGTTCGATTCGGTTTT 393
Query 296 CTTGGAGTATCTCATCAAATTGATCGAAAGAAGAATGGA 334
||||||||||||||||||| ||||| ||||| |||||||
Sbjct 394 CTTGGAGTATCTCATCAAACTGATCCAAAGACGAATGGA 432
> AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10319744-10320402 FORWARD LENGTH=659
Length=659
Score = 237 bits (128), Expect = 5e-62
Identities = 268/332 (81%), Gaps = 23/332 (7%)
Strand=Plus/Plus
Query 22 ATAATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGGAATGGCAACAGAGAGCAGCT 81
|||||||||||||||||||| || || |||||| || | |||||||||||||||||||
Sbjct 89 ATAATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCAACAGAGAGCAGC- 147
Query 82 CTCCA-CAGGAAAAGAATCTCATTTCAGAAG-TCAAGTGCTAC--C-AGCAGCTTAACAG 136
|| | ||||||||||||||||| ||| || |||| | |||| | || |||| | | |
Sbjct 148 CTTAAGGAGGAAAAGAATCTCATTCCAG-AGATCAAATTCTACTACTAGTAGCTCATCCG 206
Query 137 CTGTAGAGAAGGGATGCTTTGTAGTTTACACGGCGGAT-AACACACGCTTTGCTTTTCCT 195
| ||||||||||| || ||||| |||||||| |||||| || |||||||||||||||
Sbjct 207 CGGTAGAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAA-GTACGCTTTGCTTTTCCG 265
Query 196 ATAAGTAACTTGAGCAACTCTGTTTTTCAAGAGCTC-------TATCTGAAGAAGAGTTT 248
|||||| || |||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 266 ATAAGTTACCTGAGTAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTT 325
Query 249 GG-CCTCCCAACCGGTGGACCAATTACATTGCCGTTCGAATC-A---G-CTTTCTTGGAG 302
|| |||| || | |||||||| || ||||| ||||| || | | ||||||||||
Sbjct 326 GGTATTCCC-ACAGAAGGACCAATCACGTTGCCATTCGATTCGATTCGATTTTCTTGGAG 384
Query 303 TATCTCATCAAATTGATCGAAAGAAGAATGGA 334
|||||||||||||||||| ||||| |||||||
Sbjct 385 TATCTCATCAAATTGATCAAAAGACGAATGGA 416
> AT1G29440.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10304507-10305108 REVERSE LENGTH=602
Length=602
Score = 235 bits (127), Expect = 2e-61
Identities = 275/341 (81%), Gaps = 31/341 (9%)
Strand=Plus/Plus
Query 14 CCTAGAGAATAATGATGAACACAAAGAAGCTAATCAAGAT-GTTCAGGGAATGGCAACAG 72
||| || ||| ||||| ||| |||||||||| || ||||| | | | | ||||||||||
Sbjct 103 CCT-GAAAATGATGATAAACGCAAAGAAGCTTATGAAGATGGCT-AAGAAATGGCAACAA 160
Query 73 AGAGCAGCTCTCCACAGGAAAAGAATCTCATTTCAGA-AGTCAAGTG-CT--ACCAGCAG 128
|||||||| |||||||||||||||||||||||||||| | ||||||| || || |||||
Sbjct 161 AGAGCAGCCCTCCACAGGAAAAGAATCTCATTTCAGAGA-TCAAGTGTCTTTACTAGCAG 219
Query 129 CT-TAAC-AGCTGTAGAGAAGGGATGCTTT-GTAGTTTACACGGCGGATAACA-CACGCT 184
|| | | | ||||||| ||||| || ||| || ||||||||||||||||| | | ||||
Sbjct 220 CTCTT-CTA-CTGTAGAAAAGGGTTG-TTTCGTGGTTTACACGGCGGATAAAATC-CGCT 275
Query 185 TTGCTTTTCCTATAAGTAA-CTTGAGCAACTCTGTTTTTCAAGAGCTCT--A---T--CT 236
|||||||||| |||||| | || ||||||||||||| | || ||||| | | | ||
Sbjct 276 TTGCTTTTCCAATAAGTTATCT-GAGCAACTCTGTTGTCCAGGAGCTATTGAAAATATCT 334
Query 237 GAAGAAGAGTTT-GGCCTCCCAACCGGT-GGACCAATTACATTGCCGTTCGAATCAGC-T 293
|||||||| ||| || |||||||| || |||||||| ||||| || ||||| || || |
Sbjct 335 GAAGAAGA-TTTCGGTCTCCCAAC-GGAAGGACCAATCACATTACCATTCGATTCGGCCT 392
Query 294 TTCTTGGAGTATCTCATCAAATTGATCGAAAGAAGAATGGA 334
|| || ||||||||| ||||| ||||| ||||| |||||||
Sbjct 393 TT-TTAGAGTATCTCGTCAAACTGATCCAAAGACGAATGGA 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15784073186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5