BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921984

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29465.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  93.5    7e-19


> AT1G29465.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:10308574-10309798 
FORWARD LENGTH=466
Length=466

 Score = 93.5 bits (50),  Expect = 7e-19
 Identities = 56/59 (95%), Gaps = 0/59 (0%)
 Strand=Plus/Minus

Query  156  CATGTTACATCCATCGTAATGGATGCAGATTAAGCCTGGGGCGACAATTTCATATCATC  214
            ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct  242  CATGTTACAACCATCGTAATGGATGCAGATTAAGCCTGGGGCGACAATTCCTTATCATC  184



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5