BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921990

Length=975
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29480.1 | Symbols:  | unknown protein; Has 20 Blast hits to...   446    2e-124


> AT1G29480.1 | Symbols:  | unknown protein; Has 20 Blast hits 
to 20 proteins in 8 species: Archae - 0; Bacteria - 7; Metazoa 
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes 
- 6 (source: NCBI BLink). | chr1:10317936-10318711 FORWARD 
LENGTH=678
Length=678

 Score =  446 bits (241),  Expect = 2e-124
 Identities = 403/478 (84%), Gaps = 24/478 (5%)
 Strand=Plus/Plus

Query  420  ACAACAACAAAGGTT-ACTAAACCGGA-GAAATCAATTACAGCTTCTTCGAAAGAGTGTC  477
            ||||||||||| ||| || |||||||| |||| |||| || |||||||||||||||||||
Sbjct  214  ACAACAACAAA-GTTGACAAAACCGGAGGAAA-CAATCACGGCTTCTTCGAAAGAGTGTC  271

Query  478  TTCACGAAACAGAGACAAAGAAGCCTAATGGGATTGATTTGAGAAACTTGATCGCAAAGG  537
            |||| |||||| |||| || |||   ||   |  |||||||||| |||||||||| ||||
Sbjct  272  TTCAAGAAACAAAGACGAATAAG---AA---GCCTGATTTGAGAGACTTGATCGCCAAGG  325

Query  538  CGCAAGATAAAATCCAAAACAAACGGCAGATCGACCATCGAAGAGACGACATCACAAGGC  597
            | ||||| ||||||||||||||| || ||||  | |||||||||||  |||||||||| |
Sbjct  326  CACAAGAAAAAATCCAAAACAAAAGGGAGATTAATCATCGAAGAGAATACATCACAAGAC  385

Query  598  AGAGAATAGATGCACGCTTAGCTCTAAATCAAATGGTAGCAACCGTTAGTTTTGACGATC  657
            |||| |||| |||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct  386  AGAGGATAGCTGCACGCTTAGCTCTAAACCAGATGGTAGCAACCGTTAGCTTTGACGATC  445

Query  658  ATCTCAACTATCACAGAGAACTGGAACAGCTTGGGTGCACATTCATTCAAGAGGAAGTTG  717
            ||||||||||||| |||||| ||||||||| ||| | |||||| ||||||||  ||||||
Sbjct  446  ATCTCAACTATCATAGAGAAATGGAACAGCGTGGCTACACATTTATTCAAGATCAAGTTG  505

Query  718  ATCACTTGAGCATGTTCAATTTATGGTCAAGAAGCGACTACAATGGTATCACTAACTCTG  777
            || |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct  506  ATAACTTGAACATGTTCAGTTTATGGTCAAGAAGCGATTACAATGGTATCACTAACTCTG  565

Query  778  TCTTGGAAAAGAACAAAACGCCA-TG-GC-CTGATGAAGATTCAACGAGAAAGAAACATC  834
            ||||||||| || ||| ||| || || |  |||||||||||||| |||||||||| ||  
Sbjct  566  TCTTGGAAACGAGCAATACGACAATGCGGTCTGATGAAGATTCATCGAGAAAGAAGCA--  623

Query  835  GTCAGAGCTCAACAAAAGGAAATAGTATGGAGCAGCATTCCCTGCAGATAACAAAGAA  892
            | ||||  ||| |||||  ||| || | | | || |||||||| |||||  |||||||
Sbjct  624  G-CAGA--TCATCAAAA--AAA-AG-A-GCAACA-CATTCCCTACAGATGTCAAAGAA  672



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47722439650


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5