BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921991
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein fa... 403 4e-112
AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein fa... 315 2e-85
AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein fa... 189 1e-47
> AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10301152-10301951 REVERSE LENGTH=800
Length=800
Score = 403 bits (218), Expect = 4e-112
Identities = 266/289 (92%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 5 CTTTTCTCTAGATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 64
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 CTTTTCCCTAAATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 87
Query 65 ACAGAGAGCTGCCTTAAGCAG-AAAGAGAATCTCATTTGAGAGATCAG-TAGCTACTACT 122
|||||||||||||||||| || ||| |||||||| ||| | |||||| | | |||||||
Sbjct 88 ACAGAGAGCTGCCTTAAGAAGGAAA-AGAATCTCTTTTCATAGATCAACT-GATACTACT 145
Query 123 AGCAGCTCAACCCCTGCAGAGAAAGGCTGTTTTGTGGTTTACACATCCGATAAAATCCGC 182
|||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 146 AGCAGCTCAACCGCTGCAGAGAAGGGCTGTTTTGTGGTTTACACATCCGATAGAATCCGC 205
Query 183 TTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATATCT 242
||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 206 TTTGCTTTTCCAATAAGTTATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCC 265
Query 243 GAAGAAGAGTTTGGCCTCTCCACGTAAGGACCAATCACGTTGCCATTCG 291
||||||||||||||| || ||||| ||||||||||||| ||||||||||
Sbjct 266 GAAGAAGAGTTTGGCATCCCCACGGAAGGACCAATCACATTGCCATTCG 314
> AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10319744-10320402 FORWARD LENGTH=659
Length=659
Score = 315 bits (170), Expect = 2e-85
Identities = 254/293 (87%), Gaps = 12/293 (4%)
Strand=Plus/Plus
Query 5 CTTTTCTCTAGATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 64
||| || ||| | |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 76 CTTCTCCCTAAACATAATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCA 135
Query 65 ACAGAGAGCTGCCTTAAGCA-GAAAGAGAATCTCATTTGAGAGATC-AGTAGCTACTACT 122
||||||||| |||||||| | |||| ||||||||||| ||||||| | | ||||||||
Sbjct 136 ACAGAGAGCAGCCTTAAGGAGGAAA-AGAATCTCATTCCAGAGATCAAAT-TCTACTACT 193
Query 123 AGCAGCTCAACCCCTGCAGAGAAAGGCTGTTTTGTGGTTTACACAT-CCGATAAAATCCG 181
|| |||||| || | | |||||| |||||||||||||||||||| | | ||| || | ||
Sbjct 194 AGTAGCTCATCCGCGGTAGAGAAGGGCTGTTTTGTGGTTTACAC-TGCGGATCAAGTACG 252
Query 182 CTTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTT-TTCCAAGAGCTCTTGAAGATAT 240
|||||| ||||| |||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 253 CTTTGCTTTTCCGATAAGTTACCTGAGTAACTCTGTTATT-CAAGAGCTCTTGAAGATAT 311
Query 241 CTGAAGAAGAGTTTGGCCTCTCC-AC-GTAAGGACCAATCACGTTGCCATTCG 291
|||||||||||||||| | ||| || | ||||||||||||||||||||||||
Sbjct 312 CTGAAGAAGAGTTTGGTAT-TCCCACAG-AAGGACCAATCACGTTGCCATTCG 362
> AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10307507-10308143 REVERSE LENGTH=637
Length=637
Score = 189 bits (102), Expect = 1e-47
Identities = 153/178 (86%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 115 CTACTACTAGCAGCTCAACCCCTGCAGAGAAAGGCTGTTTTGTGGTTTACAC-ATCCGAT 173
||||||||||||||||||| ||| ||||| |||||||| ||||||||||| | |||
Sbjct 204 CTACTACTAGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGT-TGAT 262
Query 174 AAAATCCGCTTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTG 233
|||||||||||||| ||||| |||||||| ||| ||||||||||||| |||||||||||
Sbjct 263 AAAATCCGCTTTGCTTTTCCGTTAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTCTTG 322
Query 234 AAGATATCTGAAGAAGAGTTTGGCCTCTCCACGTAAGGACCAATCACGTTGCCATTCG 291
|||||||||||||||||||| |||||| || ||||||||||||||||| ||||
Sbjct 323 AAGATATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCG 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13421488983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5