BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921996
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29560.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 562 3e-159
> AT1G29560.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:10332371-10335694 FORWARD LENGTH=2179
Length=2179
Score = 562 bits (304), Expect = 3e-159
Identities = 407/455 (89%), Gaps = 14/455 (3%)
Strand=Plus/Plus
Query 366 CAGATTCATGATTACAAACACTCTACCG-TAGACACGCGAGAGTGTCTGCCACAACAGAG 424
|||| ||| | |||||||| ||||| || | |||||||||| | ||||||||||||||||
Sbjct 560 CAGACTCA-GTTTACAAACGCTCTAACGCT-GACACGCGAGTGAGTCTGCCACAACAGAG 617
Query 425 ACAACTGAGAGATGTGGTGG-GGATGCATAGGAG-ACGCCGTGAAACAGAGTCAAGATTC 482
|| ||||| ||||||||||| || ||||||| | ||||||||||||||||||||||||
Sbjct 618 ACGACTGAAAGATGTGGTGGAGG-CGCATAGG-GTACGCCGTGAAACAGAGTCAAGATTA 675
Query 483 TGGCACCAGGGGAGGGATAGATCTCCAATTTGGAGAGAGAA-TGAATACAGAATGAGATT 541
|||||||| | |||||||||||||| ||||| ||| ||| |||| ||| ||||||||
Sbjct 676 TGGCACCAAGAGAGGGATAGATCTCTGGTTTGGGGAG-GAAGTGAACCCAGGATGAGATT 734
Query 542 TGATGAAAGAACTCAGGATTGGCTAGATAGTGACTATGAAACCAGATGGAGGGTTCATGA 601
||||||||| ||||||| |||| |||||||||||||||| ||| ||||||| |||||||
Sbjct 735 TGATGAAAGTACTCAGGGTTGGAGAGATAGTGACTATGAATCCAAATGGAGGTTTCATGA 794
Query 602 GAGAACTCCGGATTGGGATTGGAGAGATAGTGAATCCAGAATGAGATTTGATGAAAGAAC 661
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 795 GAGAACTCCGGATTGGGATTGGAGAGATAGTGAATCCAGAATGAGATCTCATGAAAGAAC 854
Query 662 TCAGGATAGGAGAAGGA-GTGAATCCCAATGGGTATTTGATGAGAGAACACAGAGGAGAC 720
||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 855 TCAGGATAGGAGA-GGAAGTGAATCCCAAGGGGTATTTGATGAGAGAACAGAGAGGAGAC 913
Query 721 ACGAACCAGTGCGA---CCCGGTGAAGAGTGTTGGTGTCTGCGGTGTCGCAACGGAAGAA 777
| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 914 AAGAACCAGTGCGATGGCCCGGTGAAGAGTGTTGGTGTCTGCGGTGTCGAAACGGAGGAA 973
Query 778 GTTGCCGTTACAATCATCCAACTCAACTTCCACAG 812
||||||||||||||||||| |||||||||||||||
Sbjct 974 GTTGCCGTTACAATCATCCTACTCAACTTCCACAG 1008
Score = 329 bits (178), Expect = 4e-89
Identities = 225/247 (91%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 1 AGAACTTACTCTCAACTTTAATGGCTGACGCTGGAGATAATCAGAGAAGAAGCGATGAAA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 257 AGAACTTACTCTCAACTTTAATGGCAGACGCTGGAGATAATCAGAGAAGAAGCGATGAAA 316
Query 61 AAGAGTCGAAATCCATTGAAGAAACGAAGGAGAATGAAGACTTGGGATCTGGAATAAACG 120
||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 317 AAGAGTCGATATCAACTGAAGAAACGAAGGAGAATGAAGACTTGGGATCTGGAAGAAACG 376
Query 121 ACACAGGTCATCATGTGTATTATTACAACCAGGGAGATGAAGAGGTACGAGAGTATCTGA 180
|||||||||||||||| || | |||| ||||| | |||||||||| |||||||||||
Sbjct 377 ACACAGGTCATCATGT--AT-A---CAACGAGGGACACGAAGAGGTACTAGAGTATCTGA 430
Query 181 AACAAGAGAGACTGAAAGACGTTGAGATGCGGAGGAGAAGGCATGAAACAGAGTCGCGAT 240
||||||||||||||||||| | ||| |||| ||||| ||||||||||||||||||| ||
Sbjct 431 AACAAGAGAGACTGAAAGATGCTGATATGCAGAGGAAAAGGCATGAAACAGAGTCGAAAT 490
Query 241 CCATTGA 247
|||||||
Sbjct 491 CCATTGA 497
Score = 226 bits (122), Expect = 5e-58
Identities = 151/165 (92%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 812 GTATTTTCGGAGGGGATACTGTAAGTTGGGCTCATTTTGTAAATTTCAACACATAAGGGA 871
|||||||| ||||||||| |||||||| |||||| ||||| ||||||||||||||||||
Sbjct 1044 GTATTTTCTGAGGGGATATTGTAAGTTCGGCTCAGTTTGTGGATTTCAACACATAAGGGA 1103
Query 872 CAGGGATGTTGCAGAAACTATGTATCAGGATTGGAGATTTGATGAGAGAACTCAGAGGAG 931
|||||||||||||||| |||||||| || ||||||| ||||||| |||||||||||||||
Sbjct 1104 CAGGGATGTTGCAGAACCTATGTATGAGAATTGGAGTTTTGATGTGAGAACTCAGAGGAG 1163
Query 932 ACACGAAATAGAGTACTCAGGATTCAGGCCAGAGAAGAGGG-AAA 975
| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1164 ATATGAAATAGAGTACTCAGGATTCAGGCCAGAGAAGAGGGCAAA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72138183165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5