BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921997

Length=850
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29570.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fam...   361    8e-99


> AT1G29570.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family 
protein | chr1:10335910-10337854 FORWARD LENGTH=966
Length=966

 Score =  361 bits (195),  Expect = 8e-99
 Identities = 237/257 (92%), Gaps = 4/257 (2%)
 Strand=Plus/Plus

Query  477  GCTCAagagaatctgcaggagcagagacagagagatagcattgagaggcaggggagagag  536
            |||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||
Sbjct  667  GCTCAAGAGAATCTGCAACAACAGAGACAGAGAGATAGCATTGAGAGGCAGAGGAGAGAG  726

Query  537  gctcaagagaATCTGCATCAACAGAGATTTCAGGACATGCCAGAGAATCA-AGCCGTAAA  595
            ||||||||||||||||| ||||||||||| |||||||||||||||||||| |  |||| |
Sbjct  727  GCTCAAGAGAATCTGCAACAACAGAGATTACAGGACATGCCAGAGAATCACA-ACGTAGA  785

Query  596  TGCTCAACAGAATCTGCAGGAACAGAGACGGATAAGCATTGAGAATGAGAGAACAGAAGC  655
            || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  786  TGATCAACAGAATCTGCAGGAACAGAGACGGATAAGCATTGAGAAGGAGAGAACAGAAGC  845

Query  656  TCGTTTGAGAATAGAGCAGATCCGACCCACTGTTGCATTTCCATTAAACGAATATATTCG  715
            |||||||||| |||| |||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct  846  TCGTTTGAGACTAGAACAGATCCGACCCACTGTTTCATTTCCAATAAACGAATTTATTCG  905

Query  716  AGCCAG-AGTGGTGCTG  731
            |||| | |||| |||||
Sbjct  906  AGCC-GTAGTGTTGCTG  921


 Score =  171 bits (92),  Expect = 1e-41
 Identities = 119/132 (90%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  183  AAAGAGAGGATGACGCAGTCGAGTCCGTATCCAGTTCGTCCCGGTGTAGAAA-ACTGTCA  241
            ||||||||||||| |||||||||||||||||||||||||||||||  | ||| |||||||
Sbjct  127  AAAGAGAGGATGAGGCAGTCGAGTCCGTATCCAGTTCGTCCCGGTAAA-AAAGACTGTCA  185

Query  242  GTGTTACATCAAAACTGGTTTGTGTCGCTTTGGAAGTAGTTGCCGTTACAATCATCCTAA  301
            || |||| |||||| |||| ||||||||| | ||||||||||||||| ||||||||||| 
Sbjct  186  GTTTTACCTCAAAAATGGTCTGTGTCGCTATAGAAGTAGTTGCCGTTTCAATCATCCTAC  245

Query  302  TCAACGTCCACA  313
            ||||||||||||
Sbjct  246  TCAACGTCCACA  257


 Score =  167 bits (90),  Expect = 2e-40
 Identities = 114/126 (90%), Gaps = 0/126 (0%)
 Strand=Plus/Plus

Query  21   ATGGCAGACGCTCGAGAGAATCAGCAAGAATCTGAGAGAAGAAGCGATGAAACAGAGTCG  80
            |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct  1    ATGGCAGACGCTGGAGATAATCAGCAAGAAGCTGAGAGAAGAAGCGATGAAACAGAGTCG  60

Query  81   ATCTCCATTGAAGAACCCAAGGAGAAGGAAGACGAAGATGAGAATCTTCAAGAACAAAGA  140
            |  |||||| ||||||| |||||||| ||||||||||||||||||| ||| || |||| |
Sbjct  61   AGATCCATTAAAGAACCGAAGGAGAAAGAAGACGAAGATGAGAATCCTCAGGATCAAATA  120

Query  141  CAGAGC  146
            ||||||
Sbjct  121  CAGAGC  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41443171275


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5