BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921998

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29570.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fam...   167    2e-40
  AT1G29580.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   145    9e-34


> AT1G29570.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family 
protein | chr1:10335910-10337854 FORWARD LENGTH=966
Length=966

 Score =  167 bits (90),  Expect = 2e-40
 Identities = 115/127 (91%), Gaps = 2/127 (2%)
 Strand=Plus/Plus

Query  21   ATGGCAGACGCTCGAGAGAATCAGCAAGAAGCTGAGAGAAGAAGCGATGAAATAGAGTCG  80
            |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    ATGGCAGACGCTGGAGATAATCAGCAAGAAGCTGAGAGAAGAAGCGATGAAACAGAGTCG  60

Query  81   AGATCCATTGAAGAACCCAAGGAGAA-GAAAGACGAAGATGAGAATCTTCAAGAACAAAA  139
            ||||||||| ||||||| |||||||| ||| |||||||||||||||| ||| || |||| 
Sbjct  61   AGATCCATTAAAGAACCGAAGGAGAAAGAA-GACGAAGATGAGAATCCTCAGGATCAAAT  119

Query  140  ACCGAGC  146
            || ||||
Sbjct  120  ACAGAGC  126


> AT1G29580.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G55080.1); 
Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10338443-10339146 
FORWARD LENGTH=270
Length=270

 Score =  145 bits (78),  Expect = 9e-34
 Identities = 133/159 (84%), Gaps = 6/159 (4%)
 Strand=Plus/Plus

Query  462  ATGCAGAGGCCACAATCCCATACAACGCAGCAACAACAGTCTGTGCAGACTCCTCAGCAA  521
            ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct  1    ATGCAGAAGCCACAATCCCATACAACGCAGCAACAACAATCTGTGCAGACTCCGCTGCAA  60

Query  522  CACCAGTTGTTGGCTTCTCATTTTAATATCTATCCGTCGGTGGAAAGTTTAACAGATGCG  581
            || |||  ||| ||||||||| |   ||||   || | |||||||| ||||| ||||| |
Sbjct  61   CATCAGACGTTAGCTTCTCATCTC--TATC---CCTT-GGTGGAAAATTTAAAAGATGTG  114

Query  582  ATTGAAGCTGGAACACGAGATCACAACTCTGATTCCCTG  620
            | |||| || || |||||||||| ||||||||| |||||
Sbjct  115  ACTGAATCTAGAGCACGAGATCAGAACTCTGATGCCCTG  153



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45461903035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5